Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2489 172 7e-38 seq2628 163 3e-35 >seq2489 Length=37580 Score = 172 bits (190), Expect = 7e-38 Identities = 234/322 (73%), Gaps = 7/322 (2%) Strand=Plus/Minus Query 53588 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTG 53647 ||||||| |||||||||||| |||||||||||||| ||||||||| ||||||| |||| | Sbjct 24656 TCTGGAACAGGATAATAATTGATATCTATAATTTTGTTGAGGTTTTTGACAATGACTT-G 24598 Query 53648 ACCACATCCTTC-AGTTTGAGAAAATCAAATTGTCCATCTATTACAAACATGTTC----A 53702 | | || ||| | ||| ||||||||| | | |||| ||| ||||| || | Sbjct 24597 AGTAATTCTTTCCAATTTTTTAAAATCAAACTCTTTATCT-TTAGAAACAAATTTTGGTA 24539 Query 53703 ATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCT 53762 | ||||| ||||||| ||| || || || || | ||||| || ||||| ||| || | Sbjct 24538 AAGCAATGGATGCCAAATTGCAGACCGCAGTTTCGTCAGCATTCGAATATTCTATAATTT 24479 Query 53763 CAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTAC 53822 | || || |||||||| ||||| || ||||| | ||||| ||||| || | || | Sbjct 24478 CTGTACATAGATTACTGCACTTTATAGTTCCAACGTTTTGCTGATTTGATTTACTATTGC 24419 Query 53823 ACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTT 53882 | ||||||||||| | || |||| ||| |||||||| || || | |||||| || | Sbjct 24418 ATGCATCCTTATACAACATATATGGTACACCTGTTTCAATTTGTGAATTTATAATAGCGT 24359 Query 53883 TCCAGACGACACGAGCCTTTAT 53904 ||| | || | || ||||| Sbjct 24358 GCCATAAAACTCTTGCTTTTAT 24337 Score = 167 bits (184), Expect = 3e-36 Identities = 318/465 (68%), Gaps = 9/465 (2%) Strand=Plus/Minus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888 || ||||| || | || ||| ||||| || || || | ||| |||| ||||||| Sbjct 25818 GCAGGTTTAGTTCTTAAATAATACATGCCAGTCTTCAAACCCTTTTTCCAAGTGTAAAAA 25759 Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948 || | |||||| | ||| | |||| | ||| | ||||| |||||||||||||||||| Sbjct 25758 TGTAAACTTGTCAATTTAGCATAATTTGGACTTTGAATATGAATATTCATAGATTGACTT 25699 Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 ||||| || | | || || || ||||| | ||| || || ||||| |||||| Sbjct 25698 TGATCTATATAAATAGCTCTATCAGCTGCCATATCTATAATTAATTTCTGTGGTATTTCC 25639 Query 53009 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTG-----TATTCTGAATA 53062 || | |||||| || || || | ||| |||| || ||| ||| ||||| Sbjct 25638 CATACAGTTTTGTACAAATCCTTCAAT-TCTTGGCTAA--TTTCATCAATATGTTGAATT 25582 Query 53063 GATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 53122 || ||| | || || | |||| | || | |||||| | | | ||| Sbjct 25581 GAACCATAACCTGATATCAGTTTATTTCTCATGGTTTTATTCCAAAGACCTAATTGAGTT 25522 Query 53123 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 53182 ||| |||| | | ||||| ||| |||||||||||||| ||||| || || | ||| | Sbjct 25521 AAATCTCTCAATAAATGCGAATTGACTACTTGAAATTCACCAGATAAAACCCGACGAACG 25462 Query 53183 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 53242 |||| ||||| ||| | | ||| | || || |||||||| ||||||||||| ||||| Sbjct 25461 TAAAGGTTACTTGTAAATGCTTCAATTGATTCGTTATTTCCTAAAATTTGAGCCGTTGAC 25402 Query 53243 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTAT 53287 || || |||||||||| | || ||| |||||||| ||| ||| Sbjct 25401 GCTGTAGGCATAGGTGATAACAGCAAAGAATTTCTAACACCATAT 25357 >seq2628 Length=67642 Score = 163 bits (180), Expect = 3e-35 Identities = 664/1059 (63%), Gaps = 143/1059 (14%) Strand=Plus/Minus Query 23789 TTAAAAGTCAACATCTAAAGAAAAATGA---TTGTC----TTCTTGAGAC-----ATAAC 23836 |||||| ||| ||| || ||||| | | ||||| ||||||| || || || Sbjct 41967 TTAAAATTCAGCATTCAATGAAAATTCAAAATTGTCGCAATTCTTGATACTGTCCATGAC 41908 Query 23837 TCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGA 23896 || ||| |||||||| || || ||| ||| ||||| || || || ||| | ||| Sbjct 41907 ACCAGATTTCTGGTATTCTCCTACTCGTCGTTCAAAAAAGTTTGTCTTTCCTCC-AATAC 41849 Query 23897 TA-TATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCA-AT 23954 || |||| ||||||||||| | ||||| ||| || | | ||| ||| | || Sbjct 41848 TAATATTATCCATGAAATCAAAGGGATTATCTGAATTGTAAACTTTTTGTTGTCCAAGAT 41789 Query 23955 TCAGAAATCAATCTA-TCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCAT 24013 | | || || || || | ||||| || |||||| ||| | ||| ||||| Sbjct 41788 TTTGCAA--AAGGTAATCACCAACAAATTCAATATATTGACACATTAAATCATGGTTCAT 41731 Query 24014 TCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTC 24073 || || ||| |||| || | ||| |||| | ||||||||||||||| | || || || Sbjct 41730 GCCGATTAGTCTAACGGGCAAAGCGTCAGTTAAAAATTCTTGTTCAATTGCAACAGCTTC 41671 Query 24074 TGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAA 24133 || || ||| | |||| |||| | | ||| | | |||||| | | ||||||| Sbjct 41670 AGTAATTATACGTGTTACAAGTTCTGCCATAGGTTTAACCTTTAAATGATCATACATCAA 41611 Query 24134 ACATGCGAAATCGCAGTG------------------TAGAC----------------CCT 24159 ||| || || || || || || || ||| Sbjct 41610 ACAAGCAAAGTCACAATGCAACCCCTGAAAGATATATAAACTAAGAAATAATGAATACCT 41551 Query 24160 CGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAA 24219 | |||| ||| || | ||||||| ||| |||||||| |||||| | || ||||| | Sbjct 41550 CATCTCGACTGATGAGTTCGTTGCTAAAAGTGAGTCCTTTCATTAGACATCGTTTTTTCA 41491 Query 24220 GCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 24279 |||||| ||||| || ||||| || |||||||||||||||||||| || ||||| || | Sbjct 41490 ACCAAAAAATGGAAGCGAATGAACCTGAAAAGAAAATTCCTTCTACAGCAGCAAATGCTA 41431 Query 24280 TAAGTCTTTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCT 24336 || ||| | || | ||||||| ||||| || ||||||| |||| Sbjct 41430 CAACTCTATGAGAGTAT---GGACTGTCATCCCCAATCCATTTCAATGCCCAATTTGCCT 41374 Query 24337 TCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA------------------- 24377 | ||| || || ||||| || || || ||||| || | | Sbjct 41373 TTTTTCGTATGCAGGGCATCGTATCGATTGCATTGAACAAACGATTCCTATTTAAATTGC 41314 Query 24378 ------------TAG-----ttt----ttttCATTACTATCTTTAACATATGTATCAATC 24416 ||| ||| ||||||| | | ||||| | || || |||||| Sbjct 41313 AAAATTATACAGTAGAAATATTTATACTTTTCATCATTTTCTTTTATGTAAGTGTCAATC 41254 Query 24417 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 24476 | | ||| ||||||||||| ||||| |||||||| |||||||| | ||| ||||| Sbjct 41253 AGCAAACTGTACATTTCCGAGTGAATATTTTCAATCATTATTTGAAAACTGTAAAAACAA 41194 Query 24477 CTAGCCTCGGTAAT-CTGTA-CTTCTATACAAAATCGTTCTGC----------------- 24517 | ||| || |||| || || | || | ||| | |||||| Sbjct 41193 CGAGCTTC--TAATACTTTAACATCGTTTATAAACCTTTCTGCCTAATTTTAATTATTTT 41136 Query 24518 --------TAAA-------------TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 24556 |||| ||||||||||| || || || || ||||||||||| Sbjct 41135 TTCATTTTTAAAACTATTTACCAAGTTTTCATTCACGATGCCATCGCTTGCTGCAAAAAA 41076 Query 24557 CGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA---TTCCAATCATT 24613 ||||| || ||||| ||||||| ||||||| ||| |||| ||||||||| Sbjct 41075 AGCCAAAACGTGTTTAATAAAATGCCTTTCGTCGTCATTTAATTTATCGTTCCAATCAGA 41016 Query 24614 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 24673 | || | || ||| ||||| || ||||||||| || || |||||||||| || Sbjct 41015 AACGTCATGGCTTAAATCAACTTCATCAGTTGTCCAAAAAGAGGCTACTGCCTTTTTGTA 40956 Query 24674 CATATTCCAGATGTCATGATATTGAATTGGAAAAATAAC 24712 ||| ||||| | |||| |||| ||| ||||| || || Sbjct 40955 CATTTTCCAAAGATCATCGTATTTAATGGGAAACATGAC 40917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593695476249600