Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq3020 206 2e-48 >seq3020 Length=37895 Score = 206 bits (228), Expect = 2e-48 Identities = 385/559 (69%), Gaps = 10/559 (2%) Strand=Plus/Minus Query 97051 TCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACT 97110 |||| ||||| ||||||| ||||||||||| | ||||||||||||||| ||||| | Sbjct 25085 TCAACATGATTAACATAAACATGAGCATCTCCAATAGTGTGAATAAATTCACCAGGTTCA 25026 Query 97111 AAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGC 97170 || ||| | ||| || | |||| ||||||| ||||||||||||||||| || || || Sbjct 25025 GTATTAGTAATATGAGCCAGCATAAAAGTTAAAAGAGAATAGCTAGCAATATTGAATGGG 24966 Query 97171 ACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACAC 97230 || || ||||||||||| || |||| ||| ||||||||||| || | ||| || ||| Sbjct 24965 ACACCAAGTCCCATATCTGCAGATCGTTGGTATAACTGACACGATAACTTGTTATTACAA 24906 Query 97231 ACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACA 97290 ||||| || |||| | ||| || ||||| |||||||| | || | ||| | | Sbjct 24905 ACATAGAATTGACAGAGACAATGGCATGGGGGTAACGCCATATCCGGCAAATCCATAGCG 24846 Query 97291 TTCCAAGCACACATCAACATT---CTTCTAT-CGGTTGGGTTTGTGTGTATGGTATTAAT 97346 ||||| | | | | | ||| || |||| ||| | | ||| | | |||| | Sbjct 24845 TTCCATGAAGATAATACAATTCTCCTGCTATCCGGGTCGTTTTTAATTAAATGTAT--AA 24788 Query 97347 TATCTGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTC 97406 || ||| | |||||| || |||| | | ||||||| | | | || |||| Sbjct 24787 CATTTGC--CAGTTGATCCACTCCTTGTTTATCATAATTATCATCACATGTTTTGTATTT 24730 Query 97407 TGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATC 97466 || || |||||||||||||| |||||||| || || || | || || || |||||| Sbjct 24729 AGCACCGAAATGCCTCCATTGAAATCCATACACTGGACCTAAATCACCAGTTTTTCTATC 24670 Query 97467 ACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACA-C 97525 ||| || | ||||| ||| | ||||| ||||| ||||||||| | ||| Sbjct 24669 TTTGAATCCTAAATTATCCAAAAATTCTCTAGACCCATTCTGATCCCAAATTTTAACATT 24610 Query 97526 CAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCA 97585 ||| || | | || | || |||| |||| ||||||||| ||||| | Sbjct 24609 TCGAT-TTGTTAATACATTAGAATTGGTGCATCCCGCTATAATCCACAACAACTCTTCTA 24551 Query 97586 CAACACCTCTCCAAAATAC 97604 |||| |||||||| ||||| Sbjct 24550 CAACTCCTCTCCAGAATAC 24532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346769122966400