Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3020 246 5e-60 seq2377 149 9e-31 seq1640 87.8 3e-12 >seq3020 Length=37895 Score = 246 bits (272), Expect = 5e-60 Identities = 418/598 (70%), Gaps = 11/598 (2%) Strand=Plus/Minus Query 205362 TTGtttttttAATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAAT 205421 ||||| |||||| | || |||||||||||| | ||| |||| |||||| | ||||| Sbjct 25101 TTGTTGTTTTAAAGGTTCAACATGATTAACATAAACATGAGCATCTCCAATAGTGTGAAT 25042 Query 205422 AAATTCATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACT 205481 ||||||| |||| |||||| | ||| || | |||| |||| || | | ||| || Sbjct 25041 AAATTCACCAGGTTCAGTATTAGTAATATGAGCCAGCATAAAAGTTAAAAGAGAATAGCT 24982 Query 205482 AGCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGT 205541 ||||| ||| ||||| ||||| | |||||||| || |||| ||| || | ||||| | Sbjct 24981 AGCAATATTGAATGGGACACCAAGTCCCATATCTGCAGATCGTTGGTATAACTGACACGA 24922 Query 205542 AAGATATTTATTATTAATTACATGAAATTGTACAAA-ACAATGACAAGGTGGTATAACCA 205600 | | || |||||| |||| ||||| ||| | |||||| || || |||| ||| Sbjct 24921 TA---ACTTGTTATTACAAACATAGAATTG-ACAGAGACAATGGCATGGGGGTAACGCCA 24866 Query 205601 TATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttat 205660 ||| | ||| |||| ||||| | | ||||| || | || || || | | Sbjct 24865 TATCCGGCAAATCCATAGCGTTCCATGAAGATAATACAATTCTCCTGCTATCCGGGTCGT 24806 Query 205661 tttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTAT 205720 |||| ||| || ||||| || || | |||||| | |||||| || |||||| || Sbjct 24805 TTTTAATTAAATGTATAACATTTGCCAGTTGATCCACTCCTTGTTTATCATAATTATCAT 24746 Query 205721 C-CATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAA 205779 | ||| | | ||||||||||| ||||| | ||||||||| ||||| |||||||||||| Sbjct 24745 CACATGTTT-TGTATTTAGCACCGAAATGCCTCCATTGAAATCCATACACTGGACCTAAA 24687 Query 205780 TCACCTTCTTTTCTATCATTAAAACCACGtttttttatatattttaatgatccattttca 205839 ||||| ||||||||| || || || || | | | ||| | || ||||| | | Sbjct 24686 TCACCAGTTTTTCTATCTTTGAATCCTAAATTATCCAAAAATTCTCTAGACCCATTCTGA 24627 Query 205840 tcccaaatatggattccttt--attttttaGAATATTTGTATTAGTTGATCCAGATATAA 205897 |||||||| | | | ||| |||| ||| | ||| | ||| || |||| | ||||| Sbjct 24626 TCCCAAATTTTAA--CATTTCGATTTGTTAATACATTAGAATTGGTGCATCCCGCTATAA 24569 Query 205898 ACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGG 205955 ||| || || ||||| |||| ||||||||| || | |||||| || || | ||| Sbjct 24568 TCCACAACAACTCTTCTACAACTCCTCTCCAGAATACGCGTTTTGTAGTCAAAACTGG 24511 >seq2377 Length=22370 Score = 149 bits (164), Expect = 9e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || ||||| || || ||||| || || | || ||||| | | Sbjct 110 ATGCAAATTTTTGTTAAAACACTTACCGGAAAAACCATTACCCTTGAAGTTGAACCTAGC 169 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| ||||| |||||||||||||| ||||| || || || || ||| Sbjct 170 GATACAATTGAAAATGTAAAAGCAAAAATTCAAGATAAGGAAGGGATTCCTCCAGACCAA 229 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| || |||||||| || ||| | ||| || ||||||||| Sbjct 230 CAACGTTTAATTTTTGCTGGTAAACAATTGGAAGATGGCAGAAGTTTGAGTGATTATAAT 289 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| |||||||| ||||||||||| || | | || ||||||| || Sbjct 290 ATTCAGAAAGAATCTACTTTGCATTTAGTACTGAGATTGAGAGGTGGAAT 339 >seq1640 Length=44113 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| | || || |||| || || ||||| ||| | || |||| | | Sbjct 43978 AATGCAAATATTTGTTAAAACTTTAACTGGAAAGACTATTACTCTTGAAGTTGAGCCTAG 44037 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | || |||||||||||||||||| || || || || ||||| Sbjct 44038 TGATACTATTGAAAATGTTAAGGCGAAAATTCAAGATAAAGAGGGAATTCCTCCAGATCA 44097 Query 124658 ACAAAGGCTTATTTTT 124673 |||| | | |||||| Sbjct 44098 ACAACGTTTAATTTTT 44113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755422759936000