Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2628 159 3e-34 >seq2628 Length=67642 Score = 159 bits (176), Expect = 3e-34 Identities = 617/989 (62%), Gaps = 128/989 (13%) Strand=Plus/Minus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 ||| || ||||| | |||| |||||| || ||||| |||||| | | |||||| Sbjct 41901 TTTCTGGTATTCTCCTACTCGTCGTTCAAAAAAGTTTGTCTTTCCTCCAATACTAATATT 41842 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAA 16062 ||||| |||||||| ||||| | |||| || ||| | ||| | | ||| Sbjct 41841 ATCCATGAAATCAAAGGGATTATCTGAATTGTAAACTTTTTGTTGTCCAAGATTTTGCAA 41782 Query 16063 TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAA 16122 | ||| | |||||||| ||||| || |||||||||| |||||| || |||| Sbjct 41781 AAGGTAATCACCAACAAATTCAATATATTGACACATTAAATCATGGTTCATGCCGATTAG 41722 Query 16123 TTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTAT 16182 | |||| || | || || |||||||| | || ||| || ||| |||||| | ||||| Sbjct 41721 TCTAACGGGCAAAGCGTCAGTTAAAAATTCTTGTTCAATTGCAACAGCTTCAGTAATTAT 41662 Query 16183 ATCTCTTACTACACTATTTAACGGAGGGTTTAA----TAAGTGTTTAAACATTATACAAG 16238 | | |||| | | | | ||| ||||| ||| || | | |||| | ||||| Sbjct 41661 ACGTGTTACAAGT---TCTGCCATAGG-TTTAACCTTTAAATGATCATACATCAAACAAG 41606 Query 16239 CAAAATCACAATGCAATCCTT----------------------------------CGTCC 16264 |||| ||||||||||| || | | || Sbjct 41605 CAAAGTCACAATGCAACCCCTGAAAGATATATAAACTAAGAAATAATGAATACCTCATCT 41546 Query 16265 CTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAA 16324 | ||| || | ||||| ||| || || ||| |||||| | ||||||||| | |||| Sbjct 41545 CGACTGATGAGTTCGTTGCTAAAAGTGAGTCCTTTCATTAGACATCGTTTTTTCAACCAA 41486 Query 16325 AATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAAT 16384 || || | || |||||||| |||||||| || ||||| || || |||||||| || | | Sbjct 41485 AAAATGGAAGCGAATGAACCTGAAAAGAAAATTCCTTCTACAGCAGCAAATGCTACAACT 41426 Query 16385 CGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaatttgctttttgt 16444 | | | ||| | || | | | | |||||||| ||||||||||| |||| | Sbjct 41425 CTATGAGAGTATGGACTGTCATCCC---CAATCCATTTCAATGCCCAATTTGCCTTTTTT 41369 Query 16445 ttAACACAGTTCATGTTCTCTATTGCATTAAA---------------TAAAT-------- 16481 | ||| ||| | || |||||||| || ||||| Sbjct 41368 CGTATGCAGGGCATCGTATCGATTGCATTGAACAAACGATTCCTATTTAAATTGCAAAAT 41309 Query 16482 -----------AAttttttt-CTTTGC-----TATCTAAAATATAAGTATCTATTAGTAA 16524 ||| ||| | |||| | | ||| || ||||| || || || || Sbjct 41308 TATACAGTAGAAATATTTATACTTTTCATCATTTTCTTTTATGTAAGTGTCAATCAGCAA 41249 Query 16525 ACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGC 16584 ||| |||||||| || |||||||| || || ||| ||||||| ||||| || | ||| Sbjct 41248 ACTGTACATTTCCGAGTGAATATTTTCAATCATTATTTGAAAACTGTAAAAACAACGAGC 41189 Query 16585 TTCGGATATTTGTACTTCAGAGTA-AAACCTTTCTGCT---------------------- 16621 ||| ||| || || || | || |||||||||||| Sbjct 41188 TTCTAATACTTTAACATC-GTTTATAAACCTTTCTGCCTAATTTTAATTATTTTTTCATT 41130 Query 16622 ----------------AAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAG 16665 |||||||| || || || |||||||| ||||||||||| || | Sbjct 41129 TTTAAAACTATTTACCAAGTTTTCATTCACGATGCCATCGCTTGCTGCAAAAAAAGCCAA 41070 Query 16666 TATGTGTTTAATAAAAtttttttCGTTATC-TGAAAGTTTT--AACCAGTCAGAAAAATC 16722 | |||||||||||||| |||||| || | || || | ||| ||||||| || Sbjct 41069 AACGTGTTTAATAAAATGCCTTTCGTCGTCATTTAATTTATCGTTCCAATCAGAAACGTC 41010 Query 16723 TTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTT 16782 | |||||| || || || ||||||||||| || || |||||||| |||||||| Sbjct 41009 ATGGCTTAAATCAACTTCATCAGTTGTCCAAAAAGAGGCTACTGCCTTTTTGTACATTTT 40950 Query 16783 CCATATGTCTTCGTAAACAATAGGAAACA 16811 ||| | || ||||| ||| ||||||| Sbjct 40949 CCAAAGATCATCGTATTTAATGGGAAACA 40921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462491649472000