Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq3020 291 6e-74 >seq3020 Length=37895 Score = 291 bits (322), Expect = 6e-74 Identities = 477/680 (70%), Gaps = 13/680 (2%) Strand=Plus/Plus Query 19960 AATGGTGTACAAAAAACAGATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAA 20019 ||||| ||||| | | || |||| ||||||| || ||||| |||||||| ||| Sbjct 24421 AATGGAACACAAAGATCCAATAGAACTGGAACTGATACTTTATCAATATTTGGAGCACAA 24480 Query 20020 TCTCGATATAACTTGAGAAATGAATTT---CCCTTATTAACTACGAAACGGGTATTTTGG 20076 ||| | || | ||||| |||| || || | || ||||| ||||| ||||| ||| Sbjct 24481 TCTAGGTACGATTTGAGTAATGGTGTTATACCAGTTTTGACTACAAAACGCGTATTCTGG 24540 Query 20077 AAAGGCGTTGTTGAAGAGTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTT 20136 | ||| ||||| |||||||| || ||| |||| |||| || ||||||| | | Sbjct 24541 AGAGGAGTTGTAGAAGAGTTGTTGTGGATTATAGCGGGATGCACCAATTCTAATG---TA 24597 Query 20137 GTAGAAAAAGGA---GTTAAGATTTGGAGCGCACA-TGGATCTAAGCAATTTTTACACAG 20192 || ||| || ||||| |||||| | || | ||| |||| ||||||| | | Sbjct 24598 TTAACAAATCGAAATGTTAAAATTTGG-GATCAGAATGGGTCTAGAGAATTTTTGGATAA 24656 Query 20193 CAATGGATTTGACAACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAG 20252 ||||| | | | || || ||||| ||||| |||||||||||||||||||| Sbjct 24657 TTTAGGATTCAAAGATAGAAAAACTGGTGATTTAGGTCCAGTGTATGGATTTCAATGGAG 24716 Query 20253 ACATTTTGGAGCTGAATATGTTGACATGAACACA-AATTATTTTGGACAAGGAGTAGATC 20311 ||||| || ||| |||| ||||| | |||||| | ||||||||| |||| Sbjct 24717 GCATTTCGGTGCTAAATACAAA-ACATGTGATGATAATTATGATAAACAAGGAGTGGATC 24775 Query 20312 AATTACAAAATGTTATTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTAT 20371 || | ||||||||| |||||||||||| |||| | ||| |||||| | |||| Sbjct 24776 AACTGGCAAATGTTATACATTTAATTAAAAACGACCCGGATAGCAGGAGAATTGTATTAT 24835 Query 20372 GCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCC 20431 | |||||||||| ||| |||| ||||| || || ||||| ||| || || | Sbjct 24836 CTTCATGGAACGCTATGGATTTGCCGGATATGGCGTTACCCCCATGCCATTGTCTCTGTC 24895 Query 20432 AATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGG 20491 |||| || ||| |||||| | || |||||||| | || |||||||| || ||||||| Sbjct 24896 AATTCTATGTTTGTAATAACAAGTTATCGTGTCAGTTATACCAACGATCTGCAGATATGG 24955 Query 20492 GACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATG 20551 |||| ||||| || ||||||||||| || ||| | || | || | |||| | || ||| Sbjct 24956 GACTTGGTGTCCCATTCAATATTGCTAGCTATTCTCTTTTAACTTTTATGCTGGCTCATA 25015 Query 20552 TTACAGATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTA 20611 |||| || || | ||||| || | ||||| || ||||| || ||| |||| ||| Sbjct 25016 TTACTAATACTGAACCTGGTGAATTTATTCACACTATTGGAGATGCTCATGTTTATGTTA 25075 Query 20612 ATCATATAGAACCTTTAAAA 20631 ||||| | |||||||||||| Sbjct 25076 ATCATGTTGAACCTTTAAAA 25095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399166875006400