Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2377 122 8e-23 seq2489 95.1 1e-14 >seq2377 Length=22370 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || || || || ||||| || ||| | || |||||||| | Sbjct 110 ATGCAAATTTTTGTTAAAACACTTACCGGAAAAACCATTACCCTTGAAGTTGAACCTAGC 169 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | ||| || |||||||| | || || ||||| Sbjct 170 GATACAATTGAAAATGTAAAAGCAAAAATTCAAGATAAGGAAGGGATTCCTCCAGACCAA 229 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| |||| || ||||| ||||| |||||||| | | | |||| |||||||| Sbjct 230 CAACGTTTAATTTTTGCTGGTAAACAATTGGAAGATGGCAGAAGTTTGAGTGATTATAAT 289 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| |||||||| ||| | ||| | ||||| ||| |||| || || Sbjct 290 ATTCAGAAAGAATCTACTTTGCATTTAGTACTGAGATTGAGAGGTGG 336 >seq2489 Length=37580 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 22112 ACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTC 22171 || ||||||||| ||||| | ||| ||||| || | | |||||||||||| |||||| Sbjct 25842 ACAGTAAACTGTTGAGCGTTGGTGGCAGGTTTAGTTCTTAAATAATACATGCCAGTCTTC 25783 Query 22172 AGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTCC 22231 | |||| | ||||| | ||||||||||| |||||||| ||||| | || | Sbjct 25782 AAACCCTTTTTCCAAGTGTAAAAATGTAAACTTGTCAATTTAGCATAATTTGGACTTTGA 25723 Query 22232 ATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTT 22291 || | | ||| | || ||||| ||||| ||| | ||| ||| || ||||||| | Sbjct 25722 ATATGAATATTCATAGATTGACTTTGATCTATATAAATAGCTCTATCAGCTGCCATATCT 25663 Query 22292 ATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACA 22331 || | | | | ||||||||||| || ||||||| Sbjct 25662 ATAATTAATTTCTGTGGTATTTCCCATACAGTTTTGTACA 25623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445746786278400