Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2628 178 2e-39 seq2489 163 4e-35 >seq2628 Length=67642 Score = 178 bits (196), Expect = 2e-39 Identities = 662/1054 (63%), Gaps = 144/1054 (14%) Strand=Plus/Minus Query 33236 TTAAAAGTCAACATCTAAAGAAAAATGA---TTGTC----TTCTTGAGAC-----ATAAC 33283 |||||| ||| ||| || ||||| | | ||||| ||||||| || || || Sbjct 41967 TTAAAATTCAGCATTCAATGAAAATTCAAAATTGTCGCAATTCTTGATACTGTCCATGAC 41908 Query 33284 TCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGA 33343 || ||| |||||||| || || ||| ||| ||||| || || |||||| ||||| Sbjct 41907 ACCAGATTTCTGGTATTCTCCTACTCGTCGTTCAAAAAAGTTTGTCTTTCCT-CCAATAC 41849 Query 33344 TA-TATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCA-AT 33401 || |||| |||||||||||||| ||||| |||||||| ||||| ||| | || Sbjct 41848 TAATATTATCCATGAAATCAAAGGGATTATCTGAATTGTAAACTTTTTGTTGTCCAAGAT 41789 Query 33402 TCAGAAATCAATCTA-TCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCAT 33460 | | || || || || | || ||||| |||||| ||| | ||| ||||| Sbjct 41788 TTTGCAA--AAGGTAATCACCAACAAATTCAATATATTGACACATTAAATCATGGTTCAT 41731 Query 33461 TCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATT 33520 || || ||| |||| || | ||| |||| | ||||||||||||||| | || || | Sbjct 41730 GCCGATTAGTCTAACGGGCAAAGCGTCAGTTAAAAATTCTTGTTCAATTGCAACAGCTTC 41671 Query 33521 TGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAA 33580 || || ||| | | || |||| | | ||| | |||||| | | ||||||| Sbjct 41670 AGTAATTATACGTGTTACAAGTTCTGCCATAGGTTTAACCTTTAAATGATCATACATCAA 41611 Query 33581 ACATGCGAAATCGCAGTGCAGACCCT---------------------------------- 33606 ||| || || || || |||| |||| Sbjct 41610 ACAAGCAAAGTCACAATGCAACCCCTGAAAGATATATAAACTAAGAAATAATGAATACCT 41551 Query 33607 CGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAA 33666 | |||| ||| || | |||||| ||| |||||||| |||||| | || ||||| | Sbjct 41550 CATCTCGACTGATGAGTTCGTTGCTAAAAGTGAGTCCTTTCATTAGACATCGTTTTTTCA 41491 Query 33667 GCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33726 |||||| |||||||||||||| || |||||||| ||||||||||| |||||||| || | Sbjct 41490 ACCAAAAAATGGAAGCGAATGAACCTGAAAAGAAAATTCCTTCTACAGCAGCAAATGCTA 41431 Query 33727 TAAGTCTCTCTCCATAACCGGCGCTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCT 33783 || ||| | | | | ||||||| ||||| || ||||||| |||| Sbjct 41430 CAACTCTAT---GAGAGTATGGACTGTCATCCCCAATCCATTTCAATGCCCAATTTGCCT 41374 Query 33784 TCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA------------------------ 33819 | ||| || || |||||||| || || ||||| | Sbjct 41373 TTTTTCGTATGCAGGGCATCGTATCGATTGCATTGAACAAACGATTCCTATTTAAATTGC 41314 Query 33820 -------------AGAGATAGtt---tttttCATTACTATCTTTAACATAAGTATCGATC 33863 ||| ||| || ||||||| | | ||||| | ||||| || ||| Sbjct 41313 AAAATTATACAGTAGAAATATTTATACTTTTCATCATTTTCTTTTATGTAAGTGTCAATC 41254 Query 33864 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 33923 | | ||| ||||||||||| ||||| |||||||| || ||||| | ||| ||||| Sbjct 41253 AGCAAACTGTACATTTCCGAGTGAATATTTTCAATCATTATTTGAAAACTGTAAAAACAA 41194 Query 33924 CTAGCCTCGGTAAT--CTGCACTTCTGTACAAAATCGTTCTGC----------------- 33964 | ||| || |||| | || || | ||| | |||||| Sbjct 41193 CGAGCTTC--TAATACTTTAACATCGTTTATAAACCTTTCTGCCTAATTTTAATTATTTT 41136 Query 33965 --------TAAA-------------TTTTCATTCACTATTCCATCACTGGCTGCAAAAAA 34003 |||| ||||||||||| || ||||| || ||||||||||| Sbjct 41135 TTCATTTTTAAAACTATTTACCAAGTTTTCATTCACGATGCCATCGCTTGCTGCAAAAAA 41076 Query 34004 CGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA---TTCCAATCATT 34060 ||||| || ||||| ||||||| ||||||| ||| |||| ||||||||| Sbjct 41075 AGCCAAAACGTGTTTAATAAAATGCCTTTCGTCGTCATTTAATTTATCGTTCCAATCAGA 41016 Query 34061 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 34120 | || | || ||| ||||| || ||||||||| || || |||||||||| || Sbjct 41015 AACGTCATGGCTTAAATCAACTTCATCAGTTGTCCAAAAAGAGGCTACTGCCTTTTTGTA 40956 Query 34121 CATATTCCAGATGTCATGATATTGGATTGGGAAA 34154 ||| ||||| | |||| |||| | ||||||| Sbjct 40955 CATTTTCCAAAGATCATCGTATT-TAATGGGAAA 40923 >seq2489 Length=37580 Score = 163 bits (180), Expect = 4e-35 Identities = 232/322 (72%), Gaps = 7/322 (2%) Strand=Plus/Minus Query 62826 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTG 62885 ||||||| |||||||||||| |||||||||||||| ||||| ||| ||||||| |||| | Sbjct 24656 TCTGGAACAGGATAATAATTGATATCTATAATTTTGTTGAGGTTTTTGACAATGACTT-G 24598 Query 62886 ACCACATCCTTC-AGTTTGAGAAAATCAAATCGCCCATCTATTACAAACATGTTC----A 62940 | | || ||| | ||| ||||||||| |||| ||| ||||| || | Sbjct 24597 AGTAATTCTTTCCAATTTTTTAAAATCAAACTCTTTATCT-TTAGAAACAAATTTTGGTA 24539 Query 62941 ATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCT 63000 | |||| ||||||| ||| || || || || | ||||| || ||||| ||| || | Sbjct 24538 AAGCAATGGATGCCAAATTGCAGACCGCAGTTTCGTCAGCATTCGAATATTCTATAATTT 24479 Query 63001 CAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTAC 63060 | || || |||||||| ||||| |||||||| | ||||| ||||| || | || | Sbjct 24478 CTGTACATAGATTACTGCACTTTATAGTTCCAACGTTTTGCTGATTTGATTTACTATTGC 24419 Query 63061 ACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTT 63120 | ||||||||||| | || |||| ||| |||||||| || || | |||||| || | Sbjct 24418 ATGCATCCTTATACAACATATATGGTACACCTGTTTCAATTTGTGAATTTATAATAGCGT 24359 Query 63121 TCCAGACGACTCGAGCCTTTAT 63142 ||| | |||| || ||||| Sbjct 24358 GCCATAAAACTCTTGCTTTTAT 24337 Score = 149 bits (164), Expect = 8e-31 Identities = 314/465 (68%), Gaps = 9/465 (2%) Strand=Plus/Minus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || ||||| || | || ||| ||||| || || || | ||| |||| ||||||| Sbjct 25818 GCAGGTTTAGTTCTTAAATAATACATGCCAGTCTTCAAACCCTTTTTCCAAGTGTAAAAA 25759 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 || | ||| || | ||| | |||| | ||| | ||||| |||||||||||||||||| Sbjct 25758 TGTAAACTTGTCAATTTAGCATAATTTGGACTTTGAATATGAATATTCATAGATTGACTT 25699 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 ||||| || | | || || || ||||| | ||| || || |||| |||||| Sbjct 25698 TGATCTATATAAATAGCTCTATCAGCTGCCATATCTATAATTAATTTCTGTGGTATTTCC 25639 Query 62247 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTG-----TATTCTGAATG 62300 || | |||||| || || || | ||| |||| || ||| ||| ||||| Sbjct 25638 CATACAGTTTTGTACAAATCCTTCAAT-TCTTGGCTAA--TTTCATCAATATGTTGAATT 25582 Query 62301 GATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 62360 || ||| | || || | |||| | || | |||||| | | | ||| Sbjct 25581 GAACCATAACCTGATATCAGTTTATTTCTCATGGTTTTATTCCAAAGACCTAATTGAGTT 25522 Query 62361 AAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTG 62420 ||| |||| | | ||||| || |||||||| ||||| ||||| || || | ||| | Sbjct 25521 AAATCTCTCAATAAATGCGAATTGACTACTTGAAATTCACCAGATAAAACCCGACGAACG 25462 Query 62421 TAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62480 |||| ||||| ||| | | ||| | || || |||||||| ||||||||||| ||||| Sbjct 25461 TAAAGGTTACTTGTAAATGCTTCAATTGATTCGTTATTTCCTAAAATTTGAGCCGTTGAC 25402 Query 62481 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTAT 62525 || || |||||||||| | || ||| |||||||| ||| ||| Sbjct 25401 GCTGTAGGCATAGGTGATAACAGCAAAGAATTTCTAACACCATAT 25357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629789888025600