Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2489 241 1e-58 seq2628 109 5e-19 >seq2489 Length=37580 Score = 241 bits (266), Expect = 1e-58 Identities = 333/466 (71%), Gaps = 0/466 (0%) Strand=Plus/Minus Query 37929 ATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACA 37988 ||||||| | | ||| | | ||||| ||||| ||||| || | || |||||| Sbjct 23391 ATATAATCTATCAAATTTTTCACCCCAAACATCATCCAATCCACGAAACTCATTTGGACA 23332 Query 37989 CATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAA 38048 || || | ||| | ||||||||||||||| ||| |||||| |||||||||| ||| || Sbjct 23331 AATAAGTGTCCAATTTTCATCTTTTTCTACACGTCTCATAAACAAATCAGGTATCCACAA 23272 Query 38049 TGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAG 38108 |||| ||||||||| | ||| | ||| | || | ||| | | || | || Sbjct 23271 TGCATAGAATAAATCTCTCGTTTTGGTTTCATTAGAACCAATATTAGTGCGCAATGTAAG 23212 Query 38109 AAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTT 38168 |||||| || |||||||| ||||| ||||||| |||||| | |||||||| |||||||| Sbjct 23211 AAAATCAAAAATATCAGCATGCCAAGGTTCTAAATAAATGGCGATTGCTCCGGGTCTTTT 23152 Query 38169 ATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTAT 38228 | ||| || || | | ||||| | ||||| | | | | || ||||||||| || || Sbjct 23151 GTTACCACCTTGGTCTACATATCGAGCTGTGGCGTCAAAAACTCGTAACATAGGAACAAT 23092 Query 38229 ACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTAT 38288 ||||| ||| | || || | || ||||||| ||||||| | ||| ||| | ||| Sbjct 23091 TCCATTTGATGTTCCATTCGTTCCTTTTATATAACTACCCTTGGATCGAATACAATGTAT 23032 Query 38289 CGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAA 38348 | ||| |||||||| ||| || || |||| |||||||||| |||| ||||| | Sbjct 23031 ATTAACTCCGATTCCACCAGCACTCTTGGAAATTAGAGCGCATTGTCTTAATGTATCGTA 22972 Query 38349 TATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTA 38394 || ||||| || ||||||||||| || | || | ||| |||||| Sbjct 22971 AATTCCTTCAATGCTGTCATCCTTCATAGTAAGAAGAAAGCAACTA 22926 Score = 197 bits (218), Expect = 1e-45 Identities = 496/744 (67%), Gaps = 16/744 (2%) Strand=Plus/Minus Query 36822 TTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCAT 36881 ||| ||||| | ||||||||| ||||| || | ||| | |||| ||||||||| | Sbjct 25813 TTTAGTTCTTAAATAATACATGCCAGTCTTCAAACCCTTTTTCCAAGTGTAAAAATGTAA 25754 Query 36882 ACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTTTGATC 36941 ||| |||| ||| || || | ||| | | |||| || |||| |||||||||||||| Sbjct 25753 ACTTGTCAATTTAGCATAATTTGGACTTTGAATATGAATATTCATAGATTGACTTTGATC 25694 Query 36942 TATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAAC 37001 |||| | | |||| || |||||||| |||| ||| |||| || | ||| ||||| || Sbjct 25693 TATATAAATAGCTCTATCAGCTGCCATATCTATAATTAATTTCTGTGGTATTTCCCATAC 25634 Query 37002 CGTTTTATATATTTGTTTTATATTATCTGGTAA----ATCTAAATGTTGAATAGAACCAT 37057 ||||| || | | || | ||| | | ||| ||| | ||||||||| ||||||| Sbjct 25633 AGTTTTGTACAAATCCTTCA-ATTCTTGGCTAATTTCATCAATATGTTGAATTGAACCAT 25575 Query 37058 TATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTACTT--ATTAGTTC 37115 | | | | | | |||| | ||| |||||||| | | ||| || ||| || Sbjct 25574 AACCTGATATCAGTTTATTTCTCATGGTTTTATTCCAAAGA--CCTAATTGAGTTAAATC 25517 Query 37116 TCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATAT 37175 |||||||| || | ||| || || ||||| || |||||||| || | | || | Sbjct 25516 TCTCAATAAATGCGAATTGACTACTTGAAATTCACCAGATAAAACCCGACGAACGTAAAG 25457 Query 37176 ATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGT 37235 || || ||| ||| |||||| || || ||||| | ||| ||||||| || || || || Sbjct 25456 GTTACTTGTAAATGCTTCAATTGATTCGTTATTTCCTAAAATTTGAGCCGTTGACGCTGT 25397 Query 37236 AGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAG 37295 |||||| |||| || || | |||||| | |||| | | ||| | || Sbjct 25396 AGGCATAGGTGATAACAGCAAAGAATTTCTAACACCATATTTCATAACAAGTCTACGTAA 25337 Query 37296 TTCATTCCAATCCCATAAA---TCTGTTGGGTTCTTTAACCACATATCATATTGTAGAAT 37352 |||| |||||| | ||| || |||| || || ||| | |||| |||| | | Sbjct 25336 ATCATCCCAATCGTACAAACCTTCAATTGGTTTTTTCTCCCATAAATCAAATTGAAATAA 25277 Query 37353 ACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTC 37412 |||||| || ||| || | | | || ||||| ||| | || ||||||||| Sbjct 25276 ACCTTTGCTGATTGGTGATCCCTGGAAGGTTTCATATGGTTCAGAATCTTTAGCTAG-CA 25218 Query 37413 GCA-ACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTT 37471 ||| ||| | | || ||||| || || ||||| || |||| | |||| || Sbjct 25217 GCATACTTTGATAAACCGCAGCATAGTAAATAGTTTCAAATATTTTTTTATTCAAATCCA 25158 Query 37472 TTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACA-TCAGCCAAACCCTGA 37530 | |||| || ||| |||| | | | || |||| ||| ||| || ||||| |||||| Sbjct 25157 TAGCTTTTTTACTAGTAAATGGAAAACGCATCAATACAAA-ACAGTCGGCCAAGCCCTGA 25099 Query 37531 ACACCGATACCTATGGGTCTATGT 37554 || || || || || || | |||| Sbjct 25098 ACTCCAATTCCAATTGGACGATGT 25075 Score = 122 bits (134), Expect = 8e-23 Identities = 214/311 (69%), Gaps = 3/311 (1%) Strand=Plus/Minus Query 37582 ACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATT 37641 || |||||||||||||||||||| ||||| || || ||||| || | | || |||||| Sbjct 24650 ACAGGATAATAATTGATATCTATAATTTTGTTGAGGTTTTTGACAATGACTTGAGTAATT 24591 Query 37642 ATTCTCAACTTGTCGAACATAAATACGTTA---TTATTAACAAATTTACTCAACGAAATA 37698 || ||| || | || ||| | ||| ||| ||||||||| || | ||| Sbjct 24590 CTTTCCAATTTTTTAAAATCAAACTCTTTATCTTTAGAAACAAATTTTGGTAAAGCAATG 24531 Query 37699 GATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAG 37758 ||| | | ||| || || ||| ||| || | || | ||| |||||| |||||||| Sbjct 24530 GATGCCAAATTGCAGACCGCAGTTTCGTCAGCATTCGAATATTCTATAATTTCTGTACAT 24471 Query 37759 AGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCT 37818 |||||||| | | || ||||| | || ||||| ||||| |||| || | ||| Sbjct 24470 AGATTACTGCACTTTATAGTTCCAACGTTTTGCTGATTTGATTTACTATTGCATGCATCC 24411 Query 37819 TTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAA 37878 ||||| | ||||| || ||| ||| ||||| | | ||||||| | ||||||| Sbjct 24410 TTATACAACATATATGGTACACCTGTTTCAATTTGTGAATTTATAATAGCGTGCCATAAA 24351 Query 37879 CTTCTTGCTTT 37889 ||||||||| Sbjct 24350 ACTCTTGCTTT 24340 >seq2628 Length=67642 Score = 109 bits (120), Expect = 5e-19 Identities = 608/989 (61%), Gaps = 123/989 (12%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTC--TAGTGATATAT 11396 || || ||||| | ||||||||||| ||||| || ||||| ||| | || | |||| | Sbjct 41900 TTCTGGTATTCTCCTACTCGTCGTTCAAAAAAGTTTGTCTTTCCTCCAATACTAATAT-T 41842 Query 11397 ACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTA 11456 | ||||| || ||| ||||||| | |||| | ||||||| || | | | | Sbjct 41841 A-TCCATGAAATCAAAGGGATTATCTGAATTGTAAACTTTTTGTTGTCCAAGATTTTGCA 41783 Query 11457 ATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAA 11516 | | ||| | || ||||| ||||| ||| |||||||| | ||||| || || | Sbjct 41782 AAAGGTAATCACCAACAAATTCAATATATTGACACATTAAATCATGGTTCATGCCGATTA 41723 Query 11517 GATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTA 11576 | || || | ||| | || ||||| || | ||| || ||| || ||| | |||| Sbjct 41722 GTCTAACGGGCAAAGCGTCAGTTAAAAATTCTTGTTCAATTGCAACAGCTTCAGTAATTA 41663 Query 11577 TCGACGTTATAACTTCCTTAGAT-GGTGGATGTAATAAATGTTTAAACATTAAACACGCA 11635 | |||| || ||| | || ||| | |||||| | | |||| ||||| ||| Sbjct 41662 TACGTGTTACAAGTTC-TGCCATAGGTTTAACCTTTAAATGATCATACATCAAACAAGCA 41604 Query 11636 AAATCACAATG------------------TAAAC----------------CTTCGTCTCT 11661 || |||||||| ||||| | || |||| Sbjct 41603 AAGTCACAATGCAACCCCTGAAAGATATATAAACTAAGAAATAATGAATACCTCATCTCG 41544 Query 11662 ACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAA 11721 ||| || ||||| || ||| || | ||| ||| | | ||||||||| | |||||| Sbjct 41543 ACTGATGAGTTCGTTGCTAAAAGTGAGTCCTTTCATTAGACATCGTTTTTTCAACCAAAA 41484 Query 11722 TATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCT 11781 || | ||| |||||||| |||||||| ||||| || ||||| ||||||||||| ||||| Sbjct 41483 AATGGAAGCGAATGAACCTGAAAAGAAAATTCCTTCTACAGCAGCAAATGCTACAACTCT 41424 Query 11782 TTCTCCATATACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTAC 11841 | ||| ||| |||||||| ||||||| || || ||| || Sbjct 41423 ATGAGAGTATGGACTGTCATCCCCAATCCATTTCAATGCCCAATTTGCCTTTTTTCGTAT 41364 Query 11842 GCATTCCATTGTTTCTATAGCGTTAAATAAA----------------TGCA--------- 11876 ||| ||| || || || || || || ||| |||| Sbjct 41363 GCAGGGCATCGTATCGATTGCATTGAACAAACGATTCCTATTTAAATTGCAAAATTATAC 41304 Query 11877 -----------TT----TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTAT 11921 || ||||| ||| ||| ||| || || || || | ||||| | Sbjct 41303 AGTAGAAATATTTATACTTTTCATCATTTTCTTTTATGTAAGTGTCAATCAGCAAACTGT 41244 Query 11922 ACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 ||||||| || ||||||||||| || ||||||||| | || ||||| || || ||| Sbjct 41243 ACATTTCCGAGTGAATATTTTCAATCATTATTTGAAAACTGTAAAAACAACGAGCTTCT- 41185 Query 11982 AACACTGTA-CATCCACATAAAATCTTTCCGC-------------------------TAA 12015 || ||| || |||| ||| ||||| || ||| Sbjct 41184 AATACTTTAACATCGTTTATAAACCTTTCTGCCTAATTTTAATTATTTTTTCATTTTTAA 41125 Query 12016 A-------------TTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATAT 12062 | || ||||| || || ||||| || | ||||||||| || | | | Sbjct 41124 AACTATTTACCAAGTTTTCATTCACGATGCCATCGCTTGCTGCAAAAAAAGCCAAAACGT 41065 Query 12063 GTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATC---CCAATCATCTAAATCTTTTG 12119 |||| ||||| | ||||||| | | |||||||||| ||||||| | || | Sbjct 41064 GTTTAATAAAATGCCTTTCGTCGTCATTTAATTTATCGTTCCAATCAGAAACGTCATGGC 41005 Query 12120 ATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGA 12179 |||||| ||||| ||| ||||||||| || |||| | ||| ||||||||||| | Sbjct 41004 TTAAATCAACTTCATCAGTTGTCCAAAAAGAGGCTACTGCCTTTTTGTACATTTTCCAAA 40945 Query 12180 TATCATGATACTTAATAGGGAAAATAACG 12208 ||||| || ||||| || || || ||| Sbjct 40944 GATCATCGTATTTAATGGGAAACATGACG 40916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468504184908800