Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2628 179 5e-40 seq2489 167 3e-36 >seq2628 Length=67642 Score = 179 bits (198), Expect = 5e-40 Identities = 633/1004 (63%), Gaps = 131/1004 (13%) Strand=Plus/Minus Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATA-TAT 35924 ||| |||||||| || || ||| ||| ||||| || || || ||| | ||| || ||| Sbjct 41901 TTTCTGGTATTCTCCTACTCGTCGTTCAAAAAAGTTTGTCTTTCCTCC-AATACTAATAT 41843 Query 35925 TTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCA-ATTCAGAA 35983 | ||||||||||| || ||||| ||| |||| ||||| ||| | ||| | | Sbjct 41842 TATCCATGAAATCAAAGGGATTATCTGAATTGTAAACTTTTTGTTGTCCAAGATTTTGCA 41783 Query 35984 ATCAATCTA-TCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 36042 | || || || | |||||||| |||||| ||| | ||| ||||| || || Sbjct 41782 A--AAGGTAATCACCAACAAATTCAATATATTGACACATTAAATCATGGTTCATGCCGAT 41725 Query 36043 AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 36102 ||| |||| || | ||| |||| | ||||||||||||||| | || || || || || Sbjct 41724 TAGTCTAACGGGCAAAGCGTCAGTTAAAAATTCTTGTTCAATTGCAACAGCTTCAGTAAT 41665 Query 36103 AATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 36162 ||| | |||| |||| | | ||| | | |||||| | | |||||||||| || Sbjct 41664 TATACGTGTTACAAGTTCTGCCATAGGTTTAACCTTTAAATGATCATACATCAAACAAGC 41605 Query 36163 GAAATCGCAGTG------------------TAGAC----------------CCTCGTCTC 36188 || || || || || || |||| |||| Sbjct 41604 AAAGTCACAATGCAACCCCTGAAAGATATATAAACTAAGAAATAATGAATACCTCATCTC 41545 Query 36189 TACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAA 36248 ||| || | ||||||| ||| |||||||| |||||| | || ||||| | ||||| Sbjct 41544 GACTGATGAGTTCGTTGCTAAAAGTGAGTCCTTTCATTAGACATCGTTTTTTCAACCAAA 41485 Query 36249 ATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTC 36308 | ||||| || ||||| || |||||||||||||||||||| || ||||| || | || || Sbjct 41484 AAATGGAAGCGAATGAACCTGAAAAGAAAATTCCTTCTACAGCAGCAAATGCTACAACTC 41425 Query 36309 TCTCTCCATAACCGGCACTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTTTT 36365 | | | | | |||||||| ||||| || ||||||| ||||| ||| Sbjct 41424 TAT---GAGAGTATGGACTGTCATCCCCAATCCATTTCAATGCCCAATTTGCCTTTTTTC 41368 Query 36366 TTACACAAGGCATTGTCTCTATAGCATTAA------------------------------ 36395 || || ||||| || || || ||||| | Sbjct 41367 GTATGCAGGGCATCGTATCGATTGCATTGAACAAACGATTCCTATTTAAATTGCAAAATT 41308 Query 36396 -------AGAGATAGtt---tttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445 ||| ||| || ||||||| | | ||||| | || || ||||||| | | Sbjct 41307 ATACAGTAGAAATATTTATACTTTTCATCATTTTCTTTTATGTAAGTGTCAATCAGCAAA 41248 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 || ||||||||||| ||||| |||||||| |||||||| | ||| ||||| | ||| Sbjct 41247 CTGTACATTTCCGAGTGAATATTTTCAATCATTATTTGAAAACTGTAAAAACAACGAGCT 41188 Query 36506 TCGGTAAT-CTGT-ACTTCTGTACAAAATCGTTCTGC----------------------- 36540 || |||| || | || || | ||| | |||||| Sbjct 41187 TC--TAATACTTTAACATCGTTTATAAACCTTTCTGCCTAATTTTAATTATTTTTTCATT 41130 Query 36541 --TAAA-------------TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 36585 |||| ||||||||||| || || || || ||||||||||| ||||| Sbjct 41129 TTTAAAACTATTTACCAAGTTTTCATTCACGATGCCATCGCTTGCTGCAAAAAAAGCCAA 41070 Query 36586 TACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTA---TTCCAATCATTGATATC 36642 || ||||| ||||||| |||||| ||| |||| ||||||||| | || Sbjct 41069 AACGTGTTTAATAAAATGCCTTTCGTCGTCATTTAATTTATCGTTCCAATCAGAAACGTC 41010 Query 36643 TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 36702 | || ||| ||||| || ||||||||| || || |||||||||| ||||| || Sbjct 41009 ATGGCTTAAATCAACTTCATCAGTTGTCCAAAAAGAGGCTACTGCCTTTTTGTACATTTT 40950 Query 36703 CCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTT 36746 ||| | |||| |||| ||| ||||| || || ||| |||| Sbjct 40949 CCAAAGATCATCGTATTTAATGGGAAACATGACGTATCGTTTTT 40906 >seq2489 Length=37580 Score = 167 bits (184), Expect = 3e-36 Identities = 318/465 (68%), Gaps = 9/465 (2%) Strand=Plus/Minus Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 64919 || ||||| || | || ||| ||||| || || || | ||| |||| ||||||| Sbjct 25818 GCAGGTTTAGTTCTTAAATAATACATGCCAGTCTTCAAACCCTTTTTCCAAGTGTAAAAA 25759 Query 64920 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 64979 || | ||| || | ||| | |||| | ||| | ||||| |||||||||||||||||| Sbjct 25758 TGTAAACTTGTCAATTTAGCATAATTTGGACTTTGAATATGAATATTCATAGATTGACTT 25699 Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 ||||| || | | || || || ||||| | ||| || || ||||| |||||| Sbjct 25698 TGATCTATATAAATAGCTCTATCAGCTGCCATATCTATAATTAATTTCTGTGGTATTTCC 25639 Query 65040 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTG-----TATTCTGAATG 65093 || | |||||| || || || | ||| |||| || ||| ||| ||||| Sbjct 25638 CATACAGTTTTGTACAAATCCTTCAAT-TCTTGGCTAA--TTTCATCAATATGTTGAATT 25582 Query 65094 GATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 65153 || ||| | ||| || | |||| | || | |||||| | | | ||| Sbjct 25581 GAACCATAACCTGATATCAGTTTATTTCTCATGGTTTTATTCCAAAGACCTAATTGAGTT 25522 Query 65154 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 65213 ||| |||| | | ||||| ||| |||||||||||||| ||||| || || | ||| | Sbjct 25521 AAATCTCTCAATAAATGCGAATTGACTACTTGAAATTCACCAGATAAAACCCGACGAACG 25462 Query 65214 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 65273 |||| ||||| ||| | | ||| | || || |||||||| ||||||||||| ||||| Sbjct 25461 TAAAGGTTACTTGTAAATGCTTCAATTGATTCGTTATTTCCTAAAATTTGAGCCGTTGAC 25402 Query 65274 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTAT 65318 || || |||||||||| | || ||| |||||||| ||| ||| Sbjct 25401 GCTGTAGGCATAGGTGATAACAGCAAAGAATTTCTAACACCATAT 25357 Score = 163 bits (180), Expect = 4e-35 Identities = 232/322 (72%), Gaps = 7/322 (2%) Strand=Plus/Minus Query 65619 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTG 65678 ||||||| |||||||||||| |||||||||||||| ||||| ||| ||||||| |||| | Sbjct 24656 TCTGGAACAGGATAATAATTGATATCTATAATTTTGTTGAGGTTTTTGACAATGACTT-G 24598 Query 65679 ACCACATCCTTC-AGTTTGAGAAAATCAAATCGCTCATCTATTACAAACATGTTC----A 65733 | | || ||| | ||| ||||||||| | |||| ||| ||||| || | Sbjct 24597 AGTAATTCTTTCCAATTTTTTAAAATCAAACTCTTTATCT-TTAGAAACAAATTTTGGTA 24539 Query 65734 ATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCT 65793 | |||| ||||||| ||| || || || || | ||||| || ||||| ||| || | Sbjct 24538 AAGCAATGGATGCCAAATTGCAGACCGCAGTTTCGTCAGCATTCGAATATTCTATAATTT 24479 Query 65794 CAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTAC 65853 | || || |||||||| ||||| || ||||| | ||||| ||||| || | || | Sbjct 24478 CTGTACATAGATTACTGCACTTTATAGTTCCAACGTTTTGCTGATTTGATTTACTATTGC 24419 Query 65854 ACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTT 65913 | ||||||||||| | || |||| ||| |||||||| || || | |||||| || | Sbjct 24418 ATGCATCCTTATACAACATATATGGTACACCTGTTTCAATTTGTGAATTTATAATAGCGT 24359 Query 65914 TCCAGACGACTCGAGCCTTTAT 65935 ||| | |||| || ||||| Sbjct 24358 GCCATAAAACTCTTGCTTTTAT 24337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658143840396800