Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2628 183 4e-41 seq2489 176 6e-39 >seq2628 Length=67642 Score = 183 bits (202), Expect = 4e-41 Identities = 624/988 (63%), Gaps = 132/988 (13%) Strand=Plus/Minus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATA-TAT 49726 ||| |||||||| || || ||| ||| ||||| || || |||||| ||||| || ||| Sbjct 41901 TTTCTGGTATTCTCCTACTCGTCGTTCAAAAAAGTTTGTCTTTCCT-CCAATACTAATAT 41843 Query 49727 TTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCA-ATTCAGAA 49785 | |||||||||||||| ||||| ||| |||| ||||| ||| | ||| | | Sbjct 41842 TATCCATGAAATCAAAGGGATTATCTGAATTGTAAACTTTTTGTTGTCCAAGATTTTGCA 41783 Query 49786 ATCAATCTA-TCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 49844 | || || || | |||||||| |||||| ||| | ||| ||||| || || Sbjct 41782 A--AAGGTAATCACCAACAAATTCAATATATTGACACATTAAATCATGGTTCATGCCGAT 41725 Query 49845 AAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTAT 49904 ||| |||| || | ||| |||| | ||||||||||||||| | || || || || || Sbjct 41724 TAGTCTAACGGGCAAAGCGTCAGTTAAAAATTCTTGTTCAATTGCAACAGCTTCAGTAAT 41665 Query 49905 AATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGC 49964 ||| | | || |||| | | ||| | | |||||| | | |||||||||| || Sbjct 41664 TATACGTGTTACAAGTTCTGCCATAGGTTTAACCTTTAAATGATCATACATCAAACAAGC 41605 Query 49965 GAAATCGCAGTGCAGACCCT----------------------------------CGTCTC 49990 || || || |||| |||| | |||| Sbjct 41604 AAAGTCACAATGCAACCCCTGAAAGATATATAAACTAAGAAATAATGAATACCTCATCTC 41545 Query 49991 TACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAA 50050 ||| || ||||||||| ||| |||||||| |||||| | || ||||| | ||||| Sbjct 41544 GACTGATGAGTTCGTTGCTAAAAGTGAGTCCTTTCATTAGACATCGTTTTTTCAACCAAA 41485 Query 50051 ATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTC 50110 | ||||| || ||||| || |||||||| ||||||||||| || ||||| || |||| || Sbjct 41484 AAATGGAAGCGAATGAACCTGAAAAGAAAATTCCTTCTACAGCAGCAAATGCTACAACTC 41425 Query 50111 TCTCTCCATAACTGGCGCTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTTTT 50167 | | || ||| ||||||| ||||| || ||||||| ||||| ||| Sbjct 41424 TATGAGAGTA--TGG-ACTGTCATCCCCAATCCATTTCAATGCCCAATTTGCCTTTTTTC 41368 Query 50168 TTACACAAGGCATCGTTTCTATGGCATTAA------------------------------ 50197 || || |||||||| || || ||||| | Sbjct 41367 GTATGCAGGGCATCGTATCGATTGCATTGAACAAACGATTCCTATTTAAATTGCAAAATT 41308 Query 50198 -------AGAGATAGtt---tttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 ||| ||| || ||||||| | | ||||| | ||||| || |||| | | Sbjct 41307 ATACAGTAGAAATATTTATACTTTTCATCATTTTCTTTTATGTAAGTGTCAATCAGCAAA 41248 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 || ||||||||||| ||||| |||||||| || ||||| | ||| ||||| | ||| Sbjct 41247 CTGTACATTTCCGAGTGAATATTTTCAATCATTATTTGAAAACTGTAAAAACAACGAGCT 41188 Query 50308 TCGGTAAT--CTGCACTTCTGTACAAAATCGTTCAGC----------------------- 50342 || |||| | || || | ||| | ||| || Sbjct 41187 TC--TAATACTTTAACATCGTTTATAAACCTTTCTGCCTAATTTTAATTATTTTTTCATT 41130 Query 50343 --TAAA-------------TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 50387 |||| ||||||||||| || || || || ||||||||||| ||||| Sbjct 41129 TTTAAAACTATTTACCAAGTTTTCATTCACGATGCCATCGCTTGCTGCAAAAAAAGCCAA 41070 Query 50388 TACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTA---TTCCAATCATTGATATC 50444 || ||||| |||||||| |||||| | ||| |||| ||||||||| | || Sbjct 41069 AACGTGTTTAATAAAATGCCTTTCGTCGTCATTTAATTTATCGTTCCAATCAGAAACGTC 41010 Query 50445 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 50504 | || ||| ||||| || ||||||||| || || |||||||||| ||||| || Sbjct 41009 ATGGCTTAAATCAACTTCATCAGTTGTCCAAAAAGAGGCTACTGCCTTTTTGTACATTTT 40950 Query 50505 CCAGATGTCATGATATTGGATTGGGAAA 50532 ||| | |||| |||| | ||||||| Sbjct 40949 CCAAAGATCATCGTATT-TAATGGGAAA 40923 >seq2489 Length=37580 Score = 176 bits (194), Expect = 6e-39 Identities = 320/465 (69%), Gaps = 9/465 (2%) Strand=Plus/Minus Query 78739 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAA 78798 || ||||| || | || ||| ||||| || || || | ||| |||| ||| ||| Sbjct 25818 GCAGGTTTAGTTCTTAAATAATACATGCCAGTCTTCAAACCCTTTTTCCAAGTGTAAAAA 25759 Query 78799 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 78858 || | ||| || | ||| | |||| | ||| | ||||| |||||||||||||||||| Sbjct 25758 TGTAAACTTGTCAATTTAGCATAATTTGGACTTTGAATATGAATATTCATAGATTGACTT 25699 Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918 ||||| || | | || || || ||||| | ||| || || ||||| |||||| Sbjct 25698 TGATCTATATAAATAGCTCTATCAGCTGCCATATCTATAATTAATTTCTGTGGTATTTCC 25639 Query 78919 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTG-----TATTCTGAATG 78972 || | |||||| || || || | ||| |||| || ||| ||| ||||| Sbjct 25638 CATACAGTTTTGTACAAATCCTTCAAT-TCTTGGCTAA--TTTCATCAATATGTTGAATT 25582 Query 78973 GATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTT 79032 || ||| | ||| || | |||| | || || |||||| | | | ||| Sbjct 25581 GAACCATAACCTGATATCAGTTTATTTCTCATGGTTTTATTCCAAAGACCTAATTGAGTT 25522 Query 79033 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 79092 ||| |||| | | ||||| ||| |||||||||||||| ||||| || || | ||| | Sbjct 25521 AAATCTCTCAATAAATGCGAATTGACTACTTGAAATTCACCAGATAAAACCCGACGAACG 25462 Query 79093 TAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGAT 79152 |||| ||||| ||| ||| ||| | ||||| |||||||| ||||||||||| ||||| Sbjct 25461 TAAAGGTTACTTGTAAATGCTTCAATTGATTCGTTATTTCCTAAAATTTGAGCCGTTGAC 25402 Query 79153 GCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTAT 79197 || || |||||||||| | || ||| |||||||| ||| ||| Sbjct 25401 GCTGTAGGCATAGGTGATAACAGCAAAGAATTTCTAACACCATAT 25357 Score = 145 bits (160), Expect = 1e-29 Identities = 229/323 (71%), Gaps = 9/323 (3%) Strand=Plus/Minus Query 79498 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTG 79557 ||||||| |||||||||||| |||||||||||||| ||||| || |||| || |||| | Sbjct 24656 TCTGGAACAGGATAATAATTGATATCTATAATTTTGTTGAGGTTTTTGACAATGACTT-G 24598 Query 79558 ACCACATCCTTT--AGTTTGAGAAAATCAAATCGTCCATCTATTACAAACATGTTC---- 79611 | | || |||| | ||| ||||||||| | |||| ||| ||||| || Sbjct 24597 AGTA-ATTCTTTCCAATTTTTTAAAATCAAACTCTTTATCT-TTAGAAACAAATTTTGGT 24540 Query 79612 AACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATT 79671 || || | ||||||| ||| || || || || | ||||| || ||||| ||| ||| Sbjct 24539 AAAGCAATGGATGCCAAATTGCAGACCGCAGTTTCGTCAGCATTCGAATATTCTATAATT 24480 Query 79672 TCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 79731 || || || || ||||| ||||| || ||||| | ||||| ||||| || | || Sbjct 24479 TCTGTACATAGATTACTGCACTTTATAGTTCCAACGTTTTGCTGATTTGATTTACTATTG 24420 Query 79732 CACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 79791 || ||||||||||| | || | || ||| |||||||| || || | |||||| || Sbjct 24419 CATGCATCCTTATACAACATATATGGTACACCTGTTTCAATTTGTGAATTTATAATAGCG 24360 Query 79792 TTCCAGACGACTCGAGCCTTTAT 79814 | ||| | |||| || ||||| Sbjct 24359 TGCCATAAAACTCTTGCTTTTAT 24337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718237196172800