Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2628 86.0 6e-12 >seq2628 Length=67642 Score = 86.0 bits (94), Expect = 6e-12 Identities = 120/166 (72%), Gaps = 7/166 (4%) Strand=Plus/Minus Query 14257 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14316 |||| |||||||| || || ||||| || ||||||||||| ||||| | || |||||||| Sbjct 41115 CCAAGTTTTCATTCACGATGCCATCGCTTGCTGCAAAAAAAGCCAAAACGTGTTTAATAA 41056 Query 14317 AGT---ATTGCTCTTCATTGTTGAGTTTT--TTCCAATCGGATAAATCCTTAGAAAGATC 14371 | | || || |||| || | || | |||||||| || | || | | ||| Sbjct 41055 AATGCCTTTCGTCGTCAT--TTAATTTATCGTTCCAATCAGAAACGTCATGGCTTAAATC 40998 Query 14372 TACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATT 14417 ||||||||| |||||||||| || || || ||||| |||||| Sbjct 40997 AACTTCATCAGTTGTCCAAAAAGAGGCTACTGCCTTTTTGTACATT 40952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479706891968000