Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2628 87.8 2e-12 >seq2628 Length=67642 Score = 87.8 bits (96), Expect = 2e-12 Identities = 127/177 (72%), Gaps = 7/177 (4%) Strand=Plus/Minus Query 14034 AAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATAT 14093 ||| || | | ||||||||||||| || || ||||| || ||||||||||| ||||| | Sbjct 41126 AAAACTATTTACCAAGTTTTCATTCACGATGCCATCGCTTGCTGCAAAAAAAGCCAAAAC 41067 Query 14094 GTTTTTAATAAAGT---ATTGCTCTTCATTGTTGAGTTTT--TTCCAATCGGCTAAATCC 14148 || ||||||||| | || || |||| || | || | |||||||| | | || Sbjct 41066 GTGTTTAATAAAATGCCTTTCGTCGTCAT--TTAATTTATCGTTCCAATCAGAAACGTCA 41009 Query 14149 TTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATT 14205 | | ||| ||||||||| |||||||||| || || || ||||| |||||| Sbjct 41008 TGGCTTAAATCAACTTCATCAGTTGTCCAAAAAGAGGCTACTGCCTTTTTGTACATT 40952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478567742092800