Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2628 161 1e-34 seq2489 161 1e-34 >seq2628 Length=67642 Score = 161 bits (178), Expect = 1e-34 Identities = 657/1052 (62%), Gaps = 140/1052 (13%) Strand=Plus/Minus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGA---TTGTC----TTCTTGAGAC-----ATAAC 41766 |||||| ||| ||| || ||||| | | ||||| ||||||| || || || Sbjct 41967 TTAAAATTCAGCATTCAATGAAAATTCAAAATTGTCGCAATTCTTGATACTGTCCATGAC 41908 Query 41767 TCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGA 41826 || ||| |||||||| || || ||| ||| ||||| || ||||||||| ||||| Sbjct 41907 ACCAGATTTCTGGTATTCTCCTACTCGTCGTTCAAAAAAGTTTGTCTTTCCT-CCAATAC 41849 Query 41827 TA-TATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCA-AT 41884 || |||| |||||||||||||| ||||| ||| |||| ||||| ||| | || Sbjct 41848 TAATATTATCCATGAAATCAAAGGGATTATCTGAATTGTAAACTTTTTGTTGTCCAAGAT 41789 Query 41885 TCAGAAATCAATCTA-TCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCAT 41943 | | || || || || | | ||||| |||||| ||| | ||| ||||| Sbjct 41788 TTTGCAA--AAGGTAATCACCAACAAATTCAATATATTGACACATTAAATCATGGTTCAT 41731 Query 41944 TCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTC 42003 || || ||| |||| || | ||| |||| | ||||||||||||||| | || || || Sbjct 41730 GCCGATTAGTCTAACGGGCAAAGCGTCAGTTAAAAATTCTTGTTCAATTGCAACAGCTTC 41671 Query 42004 TGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAA 42063 || || ||| | |||| |||| | | ||| | | |||||| | | ||||||| Sbjct 41670 AGTAATTATACGTGTTACAAGTTCTGCCATAGGTTTAACCTTTAAATGATCATACATCAA 41611 Query 42064 ACATGCGAAATCGCAGTGCA------GA----------------------------CCCT 42089 ||| || || || || |||| || ||| Sbjct 41610 ACAAGCAAAGTCACAATGCAACCCCTGAAAGATATATAAACTAAGAAATAATGAATACCT 41551 Query 42090 CATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAA 42149 |||||| ||| || | ||||||| ||| |||||||| |||||| | || ||||| | Sbjct 41550 CATCTCGACTGATGAGTTCGTTGCTAAAAGTGAGTCCTTTCATTAGACATCGTTTTTTCA 41491 Query 42150 GCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAA 42209 |||||| || || || ||||| || |||||||| ||||||||||| || ||||| || | Sbjct 41490 ACCAAAAAATGGAAGCGAATGAACCTGAAAAGAAAATTCCTTCTACAGCAGCAAATGCTA 41431 Query 42210 TAAGTCTCTCTCCATAACCGGCACTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCT 42266 || ||| | | | | |||||||| ||||| || ||||||| |||| Sbjct 41430 CAACTCTAT---GAGAGTATGGACTGTCATCCCCAATCCATTTCAATGCCCAATTTGCCT 41374 Query 42267 TCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA------------------------ 42302 | ||| || || |||||||| || || ||||| | Sbjct 41373 TTTTTCGTATGCAGGGCATCGTATCGATTGCATTGAACAAACGATTCCTATTTAAATTGC 41314 Query 42303 -------------AGAGATAGtt---tttttCATTACTATCTTTAACATATGTATCGATC 42346 ||| ||| || ||||||| | | ||||| | || || || ||| Sbjct 41313 AAAATTATACAGTAGAAATATTTATACTTTTCATCATTTTCTTTTATGTAAGTGTCAATC 41254 Query 42347 AAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 42406 | | ||| |||||||| || ||||| |||||||| || ||||| | ||| ||||| Sbjct 41253 AGCAAACTGTACATTTCCGAGTGAATATTTTCAATCATTATTTGAAAACTGTAAAAACAA 41194 Query 42407 CTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTT------- 42459 | || || || | || || | ||| | ||| || |||||| || Sbjct 41193 CGAGCTTCTAATACTTTAACATCGTTTATAAACCTTTCTGCCTAATTTTAATTATTTTTT 41134 Query 42460 ---------CACTATT----------------------CCGTCACTGGCTGCAAAAAACG 42488 |||||| || || || ||||||||||| | Sbjct 41133 CATTTTTAAAACTATTTACCAAGTTTTCATTCACGATGCCATCGCTTGCTGCAAAAAAAG 41074 Query 42489 CCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTA---TTCCAATCATTGA 42545 |||| || ||||| ||||||| ||||||| |||||||| ||||||||| | Sbjct 41073 CCAAAACGTGTTTAATAAAATGCCTTTCGTCGTCATTTAATTTATCGTTCCAATCAGAAA 41014 Query 42546 TATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACA 42605 || | || ||| ||||| || |||||||| || ||| |||||||||| |||| Sbjct 41013 CGTCATGGCTTAAATCAACTTCATCAGTTGTCCAAAAAGAGGCTACTGCCTTTTTGTACA 40954 Query 42606 TATTCCAGATATCATGATATTGAATTGGGAAA 42637 | ||||| | ||||| |||| || ||||||| Sbjct 40953 TTTTCCAAAGATCATCGTATTTAA-TGGGAAA 40923 >seq2489 Length=37580 Score = 161 bits (178), Expect = 1e-34 Identities = 235/324 (73%), Gaps = 11/324 (3%) Strand=Plus/Minus Query 71581 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTG 71640 ||||||| |||||||||||| |||||||||||||| ||||| ||| |||| || |||| | Sbjct 24656 TCTGGAACAGGATAATAATTGATATCTATAATTTTGTTGAGGTTTTTGACAATGACTT-G 24598 Query 71641 ACCACATCCTTT--AGTTTGAGAAAATCAAATCTCCC-ATCTATTACAAACACGTTC--- 71694 | | || |||| | ||| ||||||||| ||| |||| ||| ||||| || Sbjct 24597 AGTA-ATTCTTTCCAATTTTTTAAAATCAAA-CTCTTTATCT-TTAGAAACAAATTTTGG 24541 Query 71695 -AAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAAT 71753 || |||| ||||||| ||| || || || || | ||||| | ||||| |||||| Sbjct 24540 TAAAGCAATGGATGCCAAATTGCAGACCGCAGTTTCGTCAGCATTCGAATATTCTATAAT 24481 Query 71754 TTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 71813 ||| || || |||||||| ||||| || ||||| | ||||| ||||| || | || Sbjct 24480 TTCTGTACATAGATTACTGCACTTTATAGTTCCAACGTTTTGCTGATTTGATTTACTATT 24421 Query 71814 ACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 71873 || ||||||||||| | ||| | || ||| |||||||| || || | |||||| || Sbjct 24420 GCATGCATCCTTATACAACATATATGGTACACCTGTTTCAATTTGTGAATTTATAATAGC 24361 Query 71874 TTTCCAGACGACTCGAGCCTTTAT 71897 | ||| | |||| || ||||| Sbjct 24360 GTGCCATAAAACTCTTGCTTTTAT 24337 Score = 158 bits (174), Expect = 2e-33 Identities = 312/458 (68%), Gaps = 9/458 (2%) Strand=Plus/Minus Query 70827 TTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCAT 70886 ||| || | || ||| |||||||| || || | ||| |||| ||||||||| | Sbjct 25813 TTTAGTTCTTAAATAATACATGCCAGTCTTCAAACCCTTTTTCCAAGTGTAAAAATGTAA 25754 Query 70887 ACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATC 70946 ||| || | ||| | ||| | ||| || ||||||||||| || ||||||||||| Sbjct 25753 ACTTGTCAATTTAGCATAATTTGGACTTTGAATATGAATATTCATAGATTGACTTTGATC 25694 Query 70947 GATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAAT 71006 || | | || || || ||||| | ||| || || ||||| |||||||| | Sbjct 25693 TATATAAATAGCTCTATCAGCTGCCATATCTATAATTAATTTCTGTGGTATTTCCCATAC 25634 Query 71007 AGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTG-----TATTCTGAATGGATCC 71060 |||||| || || || | ||| |||| || ||| ||| ||||| || || Sbjct 25633 AGTTTTGTACAAATCCTTCAAT-TCTTGGCTAA--TTTCATCAATATGTTGAATTGAACC 25577 Query 71061 ACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAAC 71120 | | ||| || | ||||| | || || |||||| | | | |||||| | Sbjct 25576 ATAACCTGATATCAGTTTATTTCTCATGGTTTTATTCCAAAGACCTAATTGAGTTAAATC 25517 Query 71121 TCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAAT 71180 ||| | | ||| | ||| |||||||||||||| ||||| || || | |||| ||||| Sbjct 25516 TCTCAATAAATGCGAATTGACTACTTGAAATTCACCAGATAAAACCCGACGAACGTAAAG 25457 Query 71181 ATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGT 71240 ||||| ||| | | ||| | ||| || |||||||| ||||||||||| ||||| || || Sbjct 25456 GTTACTTGTAAATGCTTCAATTGATTCGTTATTTCCTAAAATTTGAGCCGTTGACGCTGT 25397 Query 71241 CGGCATAGGTGCCACCAATAGACTATTTCTAAGACCAT 71278 |||||||||| | || | | |||||||| ||||| Sbjct 25396 AGGCATAGGTGATAACAGCAAAGAATTTCTAACACCAT 25359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671109669875200