Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2377 123 3e-23 seq2628 89.7 5e-13 >seq2377 Length=22370 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | || |||||||| | ||||||||||| || || || ||||| ||| Sbjct 336 CCACCTCTCAATCTCAGTACTAAATGCAAAGTAGATTCTTTCTGAATATTATAATCACTC 277 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | | || ||||| | ||||||||||||| | || | |||||| || || ||||| Sbjct 276 AAACTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATTAAACGTTGTTGGTCTGGAGGA 217 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||||||| ||||| | ||| | || || | ||||| ||| Sbjct 216 ATCCCTTCCTTATCTTGAATTTTTGCTTTTACATTTTCAATTGTATCGCTAGGTTCAACT 157 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | || || ||||| | |||||| || || ||||||||| Sbjct 156 TCAAGGGTAATGGTTTTTCCGGTAAGTGTTTTAACAAAAATTTGCATA 109 >seq2628 Length=67642 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 50632 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50691 ||||| || | || ||| |||| ||||| || |||||||| ||||| | | | ||| Sbjct 41671 GAAGCTGTTGCAATTGAACAAGAATTTTTAACTGACGCTTTGCCCGTTAGACTAATCGGC 41730 Query 50692 ATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAG 50751 |||||| || | ||||| | || ||||| ||||||| || | ||| | Sbjct 41731 ATGAACCATGATTTAATGTGTCAATATATTGAATTTGTTGGTGATTACCTTTTGCAAAAT 41790 Query 50752 CTGGGACAACCGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACAT-ATC 50810 || ||||||| ||| || ||| || ||| |||||| || ||| |||| || | Sbjct 41791 CTTGGACAACAAAAAGTTTACAATTCAGATAATCCCTTTGATTTCATGGATAATATTAGT 41850 Query 50811 GTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATAC 50856 ||||||| || ||||||||||| ||| |||| ||||| |||||| Sbjct 41851 ATTGGAGGA-AAGACAAACTTTTTTGAACGACGAGTAGGAGAATAC 41895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506992091366400