Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2377 176 3e-39 seq1640 84.2 2e-11 >seq2377 Length=22370 Score = 176 bits (194), Expect = 3e-39 Identities = 178/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| | |||||||| | || || ||||| || || || ||||| || Sbjct 336 CCACCTCTCAATCTCAGTACTAAATGCAAAGTAGATTCTTTCTGAATATTATAATCACTC 277 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | |||| | ||||| |||||||| ||||| | || |||||||||||||| ||| Sbjct 276 AAACTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATTAAACGTTGTTGGTCTGGAGGA 217 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| || || |||||| ||| |||||| |||| || ||||||||| ||| || Sbjct 216 ATCCCTTCCTTATCTTGAATTTTTGCT-TTTACATTTTCAATTGTATCGCTAGGTTCAAC 158 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | |||||||||||| || || || ||||| ||||||||||||||| Sbjct 157 TTCAAGGGTAATGGTTTTTCCGGTAAGTGTTTTAACAAAAATTTGCATA 109 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| | ||| || ||||||||||| ||||| |||||||| ||||| || || ||| Sbjct 108 CCACCTCGAAGTCTCAAGACTAAATGAAGTGTGGATTCTTTTTGAATGTTATAGTCACTT 49 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGT 15244 | | |||| | ||||| |||||||| ||||| | || ||||||||| Sbjct 48 AAACTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATTAAACGTTGT 1 >seq1640 Length=44113 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 15233 ATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATT 15292 || ||||||||||| || |||||||| ||||| || |||||| ||| ||| || Sbjct 44109 ATTAAACGTTGTTGATCTGGAGGAATTCCCTCTTTATCTTGAATTTTCGCCTTAACATTT 44050 Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352 || || ||||| ||| || || || | ||||| || || || || | |||||| ||| Sbjct 44049 TCAATAGTATCACTAGGCTCAACTTCAAGAGTAATAGTCTTTCCAGTTAAAGTTTTAACA 43990 Query 15353 AAAATTTGCATATTTGAAAAT 15373 || |||||||| || ||||| Sbjct 43989 AATATTTGCATTTTCTAAAAT 43969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362163662512320