Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2628 143 2e-29 >seq2628 Length=67642 Score = 143 bits (158), Expect = 2e-29 Identities = 619/999 (62%), Gaps = 130/999 (13%) Strand=Plus/Minus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||| || ||||| | |||| | ||||||||||||||| |||||| | | |||||| Sbjct 41901 TTTCTGGTATTCTCCTACTCGTCGTTCAAAAAAGTTTGTCTTTCCTCCAATACTAATATT 41842 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 ||||| ||||| || ||||| | ||| || ||||| || | | | | || Sbjct 41841 ATCCATGAAATCAAAGGGATTATCTGAATTGTAAACTTTTTGTTGTCCAAGATTTTGCAA 41782 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 | ||| ||||||| || || || || |||||||||| |||||| || |||| Sbjct 41781 AAGGTAATCACCAACAAATTCAATATATTGACACATTAAATCATGGTTCATGCCGATTAG 41722 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 | | || |||| ||| || |||||||| | || ||| || |||| ||||| ||| ||| Sbjct 41721 TCTAACGGGCAAAGCGTCAGTTAAAAATTCTTGTTCAATTGCAACAGCTTCAGTAATTAT 41662 Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATTTGA----TAGATGCTTAAACATCATACATG 13154 | ||| | ||||| || ||| ||| | || ||| | | |||||| ||| | Sbjct 41661 ACGTGTTACAA-GTTCTGCCAT--AGG-TTTAACCTTTAAATGATCATACATCAAACAAG 41606 Query 13155 CAAAATCACAGTGCAATCCTT----------------------------------CATCT 13180 |||| ||||| ||||| || | ||||| Sbjct 41605 CAAAGTCACAATGCAACCCCTGAAAGATATATAAACTAAGAAATAATGAATACCTCATCT 41546 Query 13181 CTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAA 13240 | ||| || || ||||| ||| || || || ||| || | ||||||||| | |||| Sbjct 41545 CGACTGATGAGTTCGTTGCTAAAAGTGAGTCCTTTCATTAGACATCGTTTTTTCAACCAA 41486 Query 13241 AATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAAC 13300 || || | ||| || ||||| ||||| || |||||||| || || ||||| |||| |||| Sbjct 41485 AAAATGGAAGCGAATGAACCTGAAAAGAAAATTCCTTCTACAGCAGCAAATGCTA-CAAC 41427 Query 13301 -CTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTG 13359 || | | || | ||| | | | | ||||| || ||||| ||||| |||| Sbjct 41426 TCTATGAGAGTATGGACTGTCATCCC---CAATCCATTTCAATGCCCAATTTGCCTTTTT 41370 Query 13360 TTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAA----------------------- 13396 | | |||| ||| | || ||||| || || ||| Sbjct 41369 TCGTATGCAGGGCATCGTATCGATTGCATTGAACAAACGATTCCTATTTAAATTGCAAAA 41310 Query 13397 --------TA-----Attt----ttttCCTTACTGTCTAAAATATAAGTATCTATCAATA 13439 || |||| ||||| | | | ||| || ||||| || |||| | Sbjct 41309 TTATACAGTAGAAATATTTATACTTTTCATCATTTTCTTTTATGTAAGTGTCAATCAGCA 41250 Query 13440 AGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAG 13499 | || |||||||| || ||||||||||| ||| |||||| |||| |||||||| | || Sbjct 41249 AACTGTACATTTCCGAGTGAATATTTTCAATCATTATTTGAAAACTGTAAAAACAACGAG 41190 Query 13500 CCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCT---------------------- 13537 | ||| |||| | ||| ||| ||| |||||||| Sbjct 41189 CTTCTAATACTTTAACATCGTTTATAAACCTTTCTGCCTAATTTTAATTATTTTTTCATT 41130 Query 13538 ----------------AAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAG 13581 |||||||| || || || || || || || ||||||||||| | Sbjct 41129 TTTAAAACTATTTACCAAGTTTTCATTCACGATGCCATCGCTTGCTGCAAAAAAAGCCAA 41070 Query 13582 TATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAAC----CAATCTGGAAAAT 13637 | ||| |||||||| | |||||| || || |||| | ||||| | || | Sbjct 41069 AACGTGTTTAATAAAATGCCTTTCGTCGTCATTTAA-TTTATCGTTCCAATCAGAAACGT 41011 Query 13638 CTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCA 13697 | | |||||| || || ||| ||||||||||| || || ||||| || ||||| Sbjct 41010 CATGGCTTAAATCAACTTCATCAGTTGTCCAAAAAGAGGCTACTGCCTTTTTGTACATTT 40951 Query 13698 TCCATATATCCTTATAAACAATGGGAAACACAACGTATC 13736 |||| | ||| | || ||||||||||| ||||||| Sbjct 40950 TCCAAAGATCATCGTATTTAATGGGAAACATGACGTATC 40912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430963910855040