Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2377 217 3e-51 seq1640 127 5e-24 seq1952 100 7e-16 >seq2377 Length=22370 Score = 217 bits (240), Expect = 3e-51 Identities = 186/230 (81%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| | || ||||||| ||| || ||||||||||||||||||||||| ||| Sbjct 339 ATTCCACCTCTCAATCTCAGTACTAAATGCAAAGTAGATTCTTTCTGAATATTATAATCA 280 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | |||| || ||||| | |||||| ||||||||||||| | ||||| || ||| Sbjct 279 CTCAAACTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATTAAACGTTGTTGGTCTGGA 220 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| ||||| ||||||||||||||||| | |||||||||||||| Sbjct 219 GGAATCCCTTCCTTATCTTGAATTTTTGCTTTTACATTTTCAATTGTATCGCTAGGTTCA 160 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| || || || ||||||||||| ||||| || ||||| Sbjct 159 ACTTCAAGGGTAATGGTTTTTCCGGTAAGTGTTTTAACAAAAATTTGCAT 110 >seq1640 Length=44113 Score = 127 bits (140), Expect = 5e-24 Identities = 111/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 104425 AAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTAC 104484 |||||||| | |||||||| ||||| ||||| |||||||| ||||| || || || || Sbjct 44113 AAAAATTAAACGTTGTTGATCTGGAGGAATTCCCTCTTTATCTTGAATTTTCGCCTTAAC 44054 Query 104485 ATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTT 104544 |||||| | ||||| ||||| || || || || ||||||||||| ||||| | ||||| Sbjct 44053 ATTTTCAATAGTATCACTAGGCTCAACTTCAAGAGTAATAGTCTTTCCAGTTAAAGTTTT 43994 Query 104545 TACAAATATCTGCATTTT 104562 |||||||| |||||||| Sbjct 43993 AACAAATATTTGCATTTT 43976 >seq1952 Length=33364 Score = 100 bits (110), Expect = 7e-16 Identities = 153/228 (67%), Gaps = 35/228 (15%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 ||||||| ||||| || ||| |||| ||||||| ||||| | |||||| |||||||||| Sbjct 32230 CTTTCTGTATATTGTAATCACTTAGACTTCTACCATCTTCCAATTGTTTACCAGCAAAAA 32289 Query 104430 TTAGCCTCTGTTGATCAGGAGGT-----------------------------------AT 104454 | | ||||||||||| |||||| || Sbjct 32290 TCAATCTCTGTTGATCCGGAGGTATACCTATATAACATTAATCAGGATAATATTATACAT 32349 Query 104455 TCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTC 104514 |||||||||||||| || || ||||| |||||||| | |||||| ||||| || || Sbjct 32350 ACCTTCTTTATCCTGTATTTTCGCTTTAACATTTTCAATGGTATCCGACGGTTCAACTTC 32409 Query 104515 TAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 | |||||||| || || || | ||||| ||||| || ||||| || Sbjct 32410 CAAAGTAATAGTTTTTCCCGTTAAGGTTTTAACAAAAATTTGCATGTT 32457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151346471932160