Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq3020 178 2e-39 seq3219 105 8e-18 >seq3020 Length=37895 Score = 178 bits (196), Expect = 2e-39 Identities = 447/671 (67%), Gaps = 24/671 (4%) Strand=Plus/Minus Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAAT 6869 ||||| ||||| || || | ||||| | ||||| |||||||||||| | || ||||| Sbjct 25101 TTGTTGTTTTAAAGGTTCAACATGATTAACATAAACATGAGCATCTCCAATAGTGTGAAT 25042 Query 6870 AAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGA 6929 ||||||||| |||| ||| | | ||||| | | | | ||||| | | ||| Sbjct 25041 AAATTCACCAGGTTCAGTATTAGTAATATGAGCCAGCATAAAAGTTAAAAGAGAATAGCT 24982 Query 6930 AGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGA 6989 ||| | ||| || || ||||| | |||||||||||| |||| ||| || | ||||| || Sbjct 24981 AGCAATATTGAATGGGACACCAAGTCCCATATCTGCAGATCGTTGGTATAACTGACACGA 24922 Query 6990 TAAAATATTGTCTATAGCATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTG 7049 ||| | || | | |||| |||||||| | ||| ||||| ||||| ||| Sbjct 24921 TAACTTGTTATTACAAACATAGAATTGACAGAGACAATGGCATGGGGGTAA---CGCCAT 24865 Query 7050 ATC---TATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGT 7106 ||| | ||| | ||||| | || | || ||| | || || || | || Sbjct 24864 ATCCGGCAAATCCATAGCGTTCCATGAAGATAATACAATTCTCCTGCTATCCGG-GTCGT 24806 Query 7107 TTTTAATTTTGT-TATAATTATTTG-TAATTGATCTATACCCTGACCTTCATAATTAGTA 7164 |||||||| | ||||| ||||| | |||||| | || || ||||||||| | Sbjct 24805 TTTTAATTAAATGTATAA-CATTTGCCAGTTGATCCACTCCTTGTTTATCATAATTATCA 24747 Query 7165 TGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAA 7224 | ||| || | || ||||| || ||||| ||||||||||| ||||| | ||||||||| Sbjct 24746 TCACATGTTTTGTATTTAGCACCGAAATGCCTCCATTGAAATCCATACACTGGACCTAAA 24687 Query 7225 TCACCTTCTTCACGATGATTAAATCCTAATCGATTTAAATTAGATTTTGATCCATAAGCA 7284 ||||| || | || || |||||||| || ||| | | || |||| | Sbjct 24686 TCACCAGTTTTTCTATCTTTGAATCCTAAATTATCCAAAAATTCTCTAGACCCATTCTGA 24627 Query 7285 TCCCAAATATGTACAGAt---ttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGG 7341 |||||||| | ||| | ||| || ||| ||| |||||| || |||| | Sbjct 24626 TCCCAAATTTTAACATTTCGATTTGTTAATACATT---AGAATTGGTGCATCCCGCTATA 24570 Query 7342 AACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGG 7401 | ||| || | |||||||| | ||| | ||| || | | ||||||||| || || || Sbjct 24569 ATCCACAACAACTCTTCTACAACTCCTCTCCAGAATACGCGTTTTGTAGTCAA-AACTGG 24511 Query 7402 AAT-------GTACTTAAATCATATCTATTCTGTAAACCAAATACTGAAAGAGTACCTGT 7454 || |||| ||||| || ||| ||| ||||||| ||| | |||| | || Sbjct 24510 TATAACACCATTACTCAAATCGTACCTAGATTGTGCTCCAAATATTGATAAAGTATCAGT 24451 Query 7455 TCCAGTTCTAT 7465 ||||||||||| Sbjct 24450 TCCAGTTCTAT 24440 >seq3219 Length=15456 Score = 105 bits (116), Expect = 8e-18 Identities = 275/412 (67%), Gaps = 22/412 (5%) Strand=Plus/Plus Query 164520 AGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCA--TT 164577 ||| ||||||||| ||||||||||||| |||||||| || ||||||| || | || Sbjct 1593 AGGTATTTTATTATATGGACCTCCTGGAACGGGTAAAACCTTGCTGGCTCG-TGAAATTT 1651 Query 164578 GCTCAAGCTTTTAAATCG-CGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAACAA 164636 | || || | | | ||| || ||||||||| || || || ||| | || ||||| Sbjct 1652 GTAAAATGTTGCACACCCACGAACC--TAAAATTGTAAACGGACCGGAAATTTTAAACAA 1709 Query 164637 ATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACA 164696 |||||| || || || ||| | ||| ||||||| || ||| |||| || |||| || | Sbjct 1710 ATATGTTGGAGAATCTGAATCAAATATTAGAAAATTATTTGAGGATGCAGAAGTTGATGA 1769 Query 164697 AAAGAAAGCAGGTTTAGCTAGTAA--ATTACATGTTATTGTTTTTGATGAGATAGATGCT 164754 ||| ||| ||| || | | | ||||| | || ||||||| || || ||||| Sbjct 1770 AAAAAAATTTGGTATA--AAATCACCTTTACACATCATAATTTTTGACGAAATTGATGCA 1827 Query 164755 CTTTGCAAAAAACGTGG---TGAT-AATATTATTC--------ATGATGCAGTGGTTAAT 164802 |||| |||||| | || || | | | || ||||| || ||||| Sbjct 1828 ATTTGTAAAAAAAGAGGAACTGTTGGAGGTGGCTCTGGGGTCTATGATAGTGTAATTAAT 1887 Query 164803 CAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTATG 164862 || || | || | || || |||||| || || |||||||| | | || ||| Sbjct 1888 CAACTGTTGAGCAAGTTGGACGGGGTAGAACAATTGAACAATATTTTGGTAATTGGAATG 1947 Query 164863 ACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAG 164914 || ||||| || | |||||||| || ||||| |||| || ||||||| Sbjct 1948 ACTAACCGTAAAGACATGATTGATGAAGCGTTATTGAGACCAGGCCGATTAG 1999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595845781632000