Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2628 132 5e-26 >seq2628 Length=67642 Score = 132 bits (146), Expect = 5e-26 Identities = 431/665 (65%), Gaps = 57/665 (9%) Strand=Plus/Minus Query 21110 TTTATAAAAATATTTATTTAAAAATCAGCATCTAATGAGAA---AACATTATC----TTC 21162 |||||||| | || | |||||| ||||||| ||||| || || ||| || ||| Sbjct 41983 TTTATAAAT-TGTTAAATTAAAATTCAGCATTCAATGAAAATTCAAAATTGTCGCAATTC 41925 Query 21163 tttttt-tGAC-ATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTT 21220 || | || | || | || ||| || || || | |||| | ||| ||||| ||| Sbjct 41924 TTGATACTGTCCATGACACCAGATTTCTGGTATTCTCCTACTCGTCGTTCAAAAAAGTTT 41865 Query 21221 GTCTTTCCTTCCAATGATA-TAGATTCCATAAAATCAAATGGATTTTCAGATTT--AAAT 21277 ||||||||| ||||| || || ||||| |||||||| ||||| || || || ||| Sbjct 41864 GTCTTTCCT-CCAATACTAATATTATCCATGAAATCAAAGGGATTATCTGAATTGTAAAC 41806 Query 21278 ATTTTATTACAACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACAC 21337 |||| || || || | | || | ||| | |||||||| |||||||||||| Sbjct 41805 TTTTTGTTGT--CCAAGATTTTGCAAAAGGTAATCACCAACAAATTCAATATATTGACAC 41748 Query 21338 ATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTT 21397 ||||| ||| ||||| ||||| | | | || || | ||| | || ||||| || | Sbjct 41747 ATTAAATCATGGTTCATGCCGATTAGTCTAACGGGCAAAGCGTCAGTTAAAAATTCTTGT 41688 Query 21398 TCTATAGAGACGGCTTCAACAATTATATTTATTATCCTAGATGTAC--TAGGGGGATACA 21455 || || | || |||||| ||||||| | ||| | || | | | |||| | | Sbjct 41687 TCAATTGCAACAGCTTCAGTAATTATACGTGTTA--CAAGTTCTGCCATAGGTTTAACCT 41630 Query 21456 ATAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAAC------------------ 21497 ||| || | | |||||||||| ||||| ||||||||||| | Sbjct 41629 TTAAATGATCATACATCAAACAAGCAAAGTCACAATGCAACCCCTGAAAGATATATAAAC 41570 Query 21498 ----------------CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGC 21541 | ||||| | ||| || | ||| || ||| || | || | Sbjct 41569 TAAGAAATAATGAATACCTCATCTCGACTGATGAGTTCGTTGCTAAAAGTGAGTCCTTTC 41510 Query 21542 ATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCC 21601 |||| | || ||||| |||||||| || || || |||| |||||||||||||| || Sbjct 41509 ATTAGACATCGTTTTTTCAACCAAAAAATGGAAGCGAATGAACCTGAAAAGAAAATTCCT 41450 Query 21602 TCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCAT 21661 || || ||||||||||| || | || | | ||||| || | | |||| |||||| Sbjct 41449 TCTACAGCAGCAAATGCTACAACTCTATGAGAGTATG--GACT-GTCATCCCCAATCCAT 41393 Query 21662 TTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGA 21721 || |||||| |||||||||| | || || || ||||| || || || || | | Sbjct 41392 TTCAATGCCCAATTTGCCTTTTTTCGTATGCAGGGCATCGTATCGATTGCATTGAACAAA 41333 Query 21722 TGATT 21726 |||| Sbjct 41332 CGATT 41328 Score = 114 bits (126), Expect = 1e-20 Identities = 145/199 (73%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 21861 CCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAA 21920 ||||||||||||| || || ||||| || || |||||||| ||||| | | ||| |||| Sbjct 41115 CCAAGTTTTCATTCACGATGCCATCGCTTGCTGCAAAAAAAGCCAAAACGTGTTTAATAA 41056 Query 21921 AATATCGTTCGTTATCTGTTAATTT---TTTCCAATCTAATAAATCTTTTGATAAATCTA 21977 ||| | ||||| || ||||||| |||||||| | | || | |||||| | Sbjct 41055 AATGCCTTTCGTCGTCATTTAATTTATCGTTCCAATCAGAAACGTCATGGCTTAAATCAA 40996 Query 21978 CTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTAT 22037 |||| |||||||||||||| || | |||||||| ||||| |||| | ||||| | Sbjct 40995 CTTCATCAGTTGTCCAAAAAGAGGCTACTGCCTTTTTGTACATTTTCCAAAGATCATCGT 40936 Query 22038 ATATTATTGGAAATATTAC 22056 || | || ||||| || || Sbjct 40935 ATTTAATGGGAAACATGAC 40917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531877396364800