Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2628 183 4e-41 seq2489 167 3e-36 >seq2628 Length=67642 Score = 183 bits (202), Expect = 4e-41 Identities = 624/988 (63%), Gaps = 132/988 (13%) Strand=Plus/Minus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATA-TAT 33070 ||| |||||||| || || ||| ||| ||||| || || |||||| ||||| || ||| Sbjct 41901 TTTCTGGTATTCTCCTACTCGTCGTTCAAAAAAGTTTGTCTTTCCT-CCAATACTAATAT 41843 Query 33071 TTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCA-ATTCAGAA 33129 | |||||||||||||| ||||| ||| |||| ||||| ||| | ||| | | Sbjct 41842 TATCCATGAAATCAAAGGGATTATCTGAATTGTAAACTTTTTGTTGTCCAAGATTTTGCA 41783 Query 33130 ATCAATCTA-TCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 33188 | || || || | || ||||| |||||| ||| | ||| ||||| || || Sbjct 41782 A--AAGGTAATCACCAACAAATTCAATATATTGACACATTAAATCATGGTTCATGCCGAT 41725 Query 33189 AAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTAT 33248 ||| |||| || | ||| |||| | ||||||||||||||| | || || || || || Sbjct 41724 TAGTCTAACGGGCAAAGCGTCAGTTAAAAATTCTTGTTCAATTGCAACAGCTTCAGTAAT 41665 Query 33249 AATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGC 33308 ||| | | || |||| | | ||| | | |||||| | | |||||||||| || Sbjct 41664 TATACGTGTTACAAGTTCTGCCATAGGTTTAACCTTTAAATGATCATACATCAAACAAGC 41605 Query 33309 GAAATCGCAGTGCAGACCCT----------------------------------CGTCTC 33334 || || || |||| |||| | |||| Sbjct 41604 AAAGTCACAATGCAACCCCTGAAAGATATATAAACTAAGAAATAATGAATACCTCATCTC 41545 Query 33335 TACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAA 33394 ||| || ||||||||| ||| |||||||| |||||| | || ||||| | ||||| Sbjct 41544 GACTGATGAGTTCGTTGCTAAAAGTGAGTCCTTTCATTAGACATCGTTTTTTCAACCAAA 41485 Query 33395 ATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTC 33454 | |||||||||||||| || |||||||| ||||||||||| |||||||| || | || || Sbjct 41484 AAATGGAAGCGAATGAACCTGAAAAGAAAATTCCTTCTACAGCAGCAAATGCTACAACTC 41425 Query 33455 TCTCTCCATAACCGGCGCTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTTTT 33511 | | | | | ||||||| ||||| || ||||||| ||||| ||| Sbjct 41424 TAT---GAGAGTATGGACTGTCATCCCCAATCCATTTCAATGCCCAATTTGCCTTTTTTC 41368 Query 33512 TTACACAAGGCATCGTTTCTATGGCATTAA------------------------------ 33541 || || |||||||| || || ||||| | Sbjct 41367 GTATGCAGGGCATCGTATCGATTGCATTGAACAAACGATTCCTATTTAAATTGCAAAATT 41308 Query 33542 -------AGAGATAGtt---tttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33591 ||| ||| || ||||||| | | ||||| | ||||| || |||| | | Sbjct 41307 ATACAGTAGAAATATTTATACTTTTCATCATTTTCTTTTATGTAAGTGTCAATCAGCAAA 41248 Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 || ||||||||||| ||||| |||||||| || ||||| | ||| ||||| | ||| Sbjct 41247 CTGTACATTTCCGAGTGAATATTTTCAATCATTATTTGAAAACTGTAAAAACAACGAGCT 41188 Query 33652 TCGGTAAT-CTGTA----------------CTTCTG------------------TACA-- 33674 || |||| || || ||||| | || Sbjct 41187 TC--TAATACTTTAACATCGTTTATAAACCTTTCTGCCTAATTTTAATTATTTTTTCATT 41130 Query 33675 ---AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33731 ||| | | |||| ||||||||||| || || || || ||||||||||| ||||| Sbjct 41129 TTTAAAACTATTTACCAAGTTTTCATTCACGATGCCATCGCTTGCTGCAAAAAAAGCCAA 41070 Query 33732 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA---TTCCAATCATTGATATC 33788 || ||||| ||||||| ||||||| ||| |||| ||||||||| | || Sbjct 41069 AACGTGTTTAATAAAATGCCTTTCGTCGTCATTTAATTTATCGTTCCAATCAGAAACGTC 41010 Query 33789 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTT 33848 | || ||| ||||| || ||||||||| || || |||||||||| ||||| || Sbjct 41009 ATGGCTTAAATCAACTTCATCAGTTGTCCAAAAAGAGGCTACTGCCTTTTTGTACATTTT 40950 Query 33849 CCAGATGTCATAATATTGGATTGGGAAA 33876 ||| | |||| |||| | ||||||| Sbjct 40949 CCAAAGATCATCGTATT-TAATGGGAAA 40923 >seq2489 Length=37580 Score = 167 bits (184), Expect = 3e-36 Identities = 318/465 (68%), Gaps = 9/465 (2%) Strand=Plus/Minus Query 62016 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62075 || ||||| || | || ||| ||||| || || || | ||| |||| ||||||| Sbjct 25818 GCAGGTTTAGTTCTTAAATAATACATGCCAGTCTTCAAACCCTTTTTCCAAGTGTAAAAA 25759 Query 62076 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62135 || | ||| || | ||| | |||| | ||| | ||||| |||||||||||||||||| Sbjct 25758 TGTAAACTTGTCAATTTAGCATAATTTGGACTTTGAATATGAATATTCATAGATTGACTT 25699 Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 ||||| || | | || || || ||||| | ||| || || ||||| |||||| Sbjct 25698 TGATCTATATAAATAGCTCTATCAGCTGCCATATCTATAATTAATTTCTGTGGTATTTCC 25639 Query 62196 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTG-----TATTCTGAATG 62249 || | |||||| || || || | ||| |||| || ||| ||| ||||| Sbjct 25638 CATACAGTTTTGTACAAATCCTTCAAT-TCTTGGCTAA--TTTCATCAATATGTTGAATT 25582 Query 62250 GATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 62309 || ||| | ||| || | |||| | || | |||||| | | | ||| Sbjct 25581 GAACCATAACCTGATATCAGTTTATTTCTCATGGTTTTATTCCAAAGACCTAATTGAGTT 25522 Query 62310 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 62369 ||| |||| | | ||||| ||| |||||||||||||| ||||| || || | ||| | Sbjct 25521 AAATCTCTCAATAAATGCGAATTGACTACTTGAAATTCACCAGATAAAACCCGACGAACG 25462 Query 62370 TAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62429 |||| ||||| ||| | | ||| | || || |||||||| ||||||||||| ||||| Sbjct 25461 TAAAGGTTACTTGTAAATGCTTCAATTGATTCGTTATTTCCTAAAATTTGAGCCGTTGAC 25402 Query 62430 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTAT 62474 || || |||||||||| | || ||| |||||||| ||| ||| Sbjct 25401 GCTGTAGGCATAGGTGATAACAGCAAAGAATTTCTAACACCATAT 25357 Score = 163 bits (180), Expect = 4e-35 Identities = 232/322 (72%), Gaps = 7/322 (2%) Strand=Plus/Minus Query 62775 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTG 62834 ||||||| |||||||||||| |||||||||||||| ||||| ||| ||||||| |||| | Sbjct 24656 TCTGGAACAGGATAATAATTGATATCTATAATTTTGTTGAGGTTTTTGACAATGACTT-G 24598 Query 62835 ACCACATCCTTC-AGTTTGAGAAAATCAAATCGCCCATCTATTACAAACATGTTC----A 62889 | | || ||| | ||| ||||||||| |||| ||| ||||| || | Sbjct 24597 AGTAATTCTTTCCAATTTTTTAAAATCAAACTCTTTATCT-TTAGAAACAAATTTTGGTA 24539 Query 62890 AGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCT 62949 | |||| ||||||| ||| || || || || | ||||| || ||||| ||| || | Sbjct 24538 AAGCAATGGATGCCAAATTGCAGACCGCAGTTTCGTCAGCATTCGAATATTCTATAATTT 24479 Query 62950 CAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTAC 63009 | || || |||||||| ||||| |||||||| | ||||| ||||| || | || | Sbjct 24478 CTGTACATAGATTACTGCACTTTATAGTTCCAACGTTTTGCTGATTTGATTTACTATTGC 24419 Query 63010 ACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTT 63069 | ||||||||||| | || |||| ||| |||||||| || || | |||||| || | Sbjct 24418 ATGCATCCTTATACAACATATATGGTACACCTGTTTCAATTTGTGAATTTATAATAGCGT 24359 Query 63070 TCCAGACGACTCGAGCCTTTAT 63091 ||| | |||| || ||||| Sbjct 24358 GCCATAAAACTCTTGCTTTTAT 24337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622919790323200