Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2628 174 2e-38 seq2489 170 2e-37 >seq2628 Length=67642 Score = 174 bits (192), Expect = 2e-38 Identities = 626/993 (63%), Gaps = 131/993 (13%) Strand=Plus/Minus Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATA-TAT 32427 ||| |||||||| || || ||| ||| ||||| || || || ||| | ||| || ||| Sbjct 41901 TTTCTGGTATTCTCCTACTCGTCGTTCAAAAAAGTTTGTCTTTCCTCC-AATACTAATAT 41843 Query 32428 TTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCA-ATTCAGAA 32486 | ||||||||||| || ||||| ||| |||| ||||| ||| | ||| | | Sbjct 41842 TATCCATGAAATCAAAGGGATTATCTGAATTGTAAACTTTTTGTTGTCCAAGATTTTGCA 41783 Query 32487 ATCAATCTA-TCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 32545 | || || || | |||||||| |||||| ||| | ||| ||||| || || Sbjct 41782 A--AAGGTAATCACCAACAAATTCAATATATTGACACATTAAATCATGGTTCATGCCGAT 41725 Query 32546 AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 32605 ||| |||| || | ||| |||| | ||||||||||||||| | || || || || || Sbjct 41724 TAGTCTAACGGGCAAAGCGTCAGTTAAAAATTCTTGTTCAATTGCAACAGCTTCAGTAAT 41665 Query 32606 AATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 32665 ||| | |||| |||| | | ||| | | |||||| | | |||||||||| || Sbjct 41664 TATACGTGTTACAAGTTCTGCCATAGGTTTAACCTTTAAATGATCATACATCAAACAAGC 41605 Query 32666 GAAATCGCAGTG------------------TAGAC----------------CCTCGTCTC 32691 || || || || || || |||| |||| Sbjct 41604 AAAGTCACAATGCAACCCCTGAAAGATATATAAACTAAGAAATAATGAATACCTCATCTC 41545 Query 32692 TACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAA 32751 ||| || | ||||||| ||| |||||||| |||||| | || ||||| | ||||| Sbjct 41544 GACTGATGAGTTCGTTGCTAAAAGTGAGTCCTTTCATTAGACATCGTTTTTTCAACCAAA 41485 Query 32752 ATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTC 32811 | ||||| || ||||| || |||||||||||||||||||| || ||||| || | || || Sbjct 41484 AAATGGAAGCGAATGAACCTGAAAAGAAAATTCCTTCTACAGCAGCAAATGCTACAACTC 41425 Query 32812 TCTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTT 32868 | | || | ||||||| ||||| || ||||||| ||||| ||| Sbjct 41424 TATGAGAGTAT---GGACTGTCATCCCCAATCCATTTCAATGCCCAATTTGCCTTTTTTC 41368 Query 32869 TTACACAAGGCATTGTCTCTATAGCATTAAAGAGA------------------------- 32903 || || ||||| || || || ||||| || | | Sbjct 41367 GTATGCAGGGCATCGTATCGATTGCATTGAACAAACGATTCCTATTTAAATTGCAAAATT 41308 Query 32904 ------TAG-----ttt----ttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 ||| ||| ||||||| | | ||||| | || || ||||||| | | Sbjct 41307 ATACAGTAGAAATATTTATACTTTTCATCATTTTCTTTTATGTAAGTGTCAATCAGCAAA 41248 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 || ||||||||||| ||||| |||||||| |||||||| | ||| || || | ||| Sbjct 41247 CTGTACATTTCCGAGTGAATATTTTCAATCATTATTTGAAAACTGTAAAAACAACGAGCT 41188 Query 33009 TCGGTAAT-CTGTA-CTTCTGTACAAAATCGTTCTGC----------------------- 33043 || |||| || || | || | ||| | |||||| Sbjct 41187 TC--TAATACTTTAACATCGTTTATAAACCTTTCTGCCTAATTTTAATTATTTTTTCATT 41130 Query 33044 --TAAA-------------TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33088 |||| ||||||||||| || || || || ||||||||||| ||||| Sbjct 41129 TTTAAAACTATTTACCAAGTTTTCATTCACGATGCCATCGCTTGCTGCAAAAAAAGCCAA 41070 Query 33089 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA---TTCCAATCATTGATATC 33145 || ||||| ||||||| ||||||| ||| |||| ||||||||| | || Sbjct 41069 AACGTGTTTAATAAAATGCCTTTCGTCGTCATTTAATTTATCGTTCCAATCAGAAACGTC 41010 Query 33146 TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 33205 | || ||| ||||| || ||||||||| || || |||||||||| ||||| || Sbjct 41009 ATGGCTTAAATCAACTTCATCAGTTGTCCAAAAAGAGGCTACTGCCTTTTTGTACATTTT 40950 Query 33206 CCAGATGTCATGATATTGAATTGGAAAAATAAC 33238 ||| | |||| |||| ||| ||||| || || Sbjct 40949 CCAAAGATCATCGTATTTAATGGGAAACATGAC 40917 >seq2489 Length=37580 Score = 170 bits (188), Expect = 2e-37 Identities = 319/465 (69%), Gaps = 9/465 (2%) Strand=Plus/Minus Query 61871 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 61930 || ||||| || | || ||| ||||| || || || | ||| |||| ||||||| Sbjct 25818 GCAGGTTTAGTTCTTAAATAATACATGCCAGTCTTCAAACCCTTTTTCCAAGTGTAAAAA 25759 Query 61931 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 61990 || | ||| || | ||| | |||| | ||| | ||||| |||||||||||||||||| Sbjct 25758 TGTAAACTTGTCAATTTAGCATAATTTGGACTTTGAATATGAATATTCATAGATTGACTT 25699 Query 61991 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCC 62050 ||||| || | | || || || ||||| | |||||| || ||||| |||||| Sbjct 25698 TGATCTATATAAATAGCTCTATCAGCTGCCATATCTATAATTAATTTCTGTGGTATTTCC 25639 Query 62051 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTG-----TATTCTGAATG 62104 || | |||||| || || || | ||| |||| || ||| ||| ||||| Sbjct 25638 CATACAGTTTTGTACAAATCCTTCAAT-TCTTGGCTAA--TTTCATCAATATGTTGAATT 25582 Query 62105 GATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 62164 || ||| | ||| || | |||| | || | |||||| | | | ||| Sbjct 25581 GAACCATAACCTGATATCAGTTTATTTCTCATGGTTTTATTCCAAAGACCTAATTGAGTT 25522 Query 62165 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 62224 ||| |||| | | ||||| ||| |||||||||||||| ||||| || || | ||| | Sbjct 25521 AAATCTCTCAATAAATGCGAATTGACTACTTGAAATTCACCAGATAAAACCCGACGAACG 25462 Query 62225 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62284 |||| ||||| ||| | | ||| | || || |||||||| ||||||||||| ||||| Sbjct 25461 TAAAGGTTACTTGTAAATGCTTCAATTGATTCGTTATTTCCTAAAATTTGAGCCGTTGAC 25402 Query 62285 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTAT 62329 || || |||||||||| | || ||| |||||||| ||| ||| Sbjct 25401 GCTGTAGGCATAGGTGATAACAGCAAAGAATTTCTAACACCATAT 25357 Score = 159 bits (176), Expect = 4e-34 Identities = 231/322 (72%), Gaps = 7/322 (2%) Strand=Plus/Minus Query 62630 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTG 62689 ||||||| |||||||||||| |||||||||||||| ||||| ||| ||||||| |||| | Sbjct 24656 TCTGGAACAGGATAATAATTGATATCTATAATTTTGTTGAGGTTTTTGACAATGACTT-G 24598 Query 62690 ACCACATCCTTC-AGTTTGAGAAAATCAAATCGCCCATCTATTACAAACATGTTC----A 62744 | | || ||| | ||| ||||||||| |||| ||| ||||| || | Sbjct 24597 AGTAATTCTTTCCAATTTTTTAAAATCAAACTCTTTATCT-TTAGAAACAAATTTTGGTA 24539 Query 62745 ATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCT 62804 | |||| ||||||| ||| || || || || | ||||| || ||||| ||| || | Sbjct 24538 AAGCAATGGATGCCAAATTGCAGACCGCAGTTTCGTCAGCATTCGAATATTCTATAATTT 24479 Query 62805 CAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTAC 62864 | || || |||||||| ||||| || ||||| | ||||| ||||| || | || | Sbjct 24478 CTGTACATAGATTACTGCACTTTATAGTTCCAACGTTTTGCTGATTTGATTTACTATTGC 24419 Query 62865 ACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTT 62924 | ||||||||||| | || |||| ||| |||||||| || || | |||||| || | Sbjct 24418 ATGCATCCTTATACAACATATATGGTACACCTGTTTCAATTTGTGAATTTATAATAGCGT 24359 Query 62925 TCCAGACGACTCGAGCCTTTAT 62946 ||| | |||| || ||||| Sbjct 24358 GCCATAAAACTCTTGCTTTTAT 24337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633604120192000