Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2628 107 2e-18 >seq2628 Length=67642 Score = 107 bits (118), Expect = 2e-18 Identities = 150/210 (71%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 93466 AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATAT 93525 ||| || | ||| | |||||||| || || |||||| |||||||||||||||||| | Sbjct 41126 AAAACTATTTACCAAGTTTTCATTCACGATGCCATCGCTTGCTGCAAAAAAAGCCAAAAC 41067 Query 93526 ATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATC---CCAATCGGATAGATCTTT 93582 || || |||||||| | || || || || | ||||| |||||| || | || | Sbjct 41066 GTGTTTAATAAAATGCCTTTCGTCGTCATTTAATTTATCGTTCCAATCAGAAACGTCATG 41007 Query 93583 TGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCA 93642 | ||| ||||| || |||||||| || ||| |||| ||||||||||| | ||| Sbjct 41006 GCTTAAATCAACTTCATCAGTTGTCCAAAAAGAGGCTACTGCCTTTTTGTACATTTTCCA 40947 Query 93643 TATGTCTTGATATTGAATTGGAAATATGAC 93672 | || | |||| ||| ||||| ||||| Sbjct 40946 AAGATCATCGTATTTAATGGGAAACATGAC 40917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556836298124800