Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2377 143 2e-29 seq1640 102 7e-17 seq2489 93.3 4e-14 >seq2377 Length=22370 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||||||||| | ||||| ||||| | || |||||||| ||| | | | Sbjct 110 ATGCAAATTTTTGTTAAAACACTTACCGGAAAAACCATTACCCTTGAAGTTGAACCTAGC 169 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| |||||||||||| ||||| || ||||| || || ||| Sbjct 170 GATACAATTGAAAATGTAAAAGCAAAAATTCAAGATAAGGAAGGGATTCCTCCAGACCAA 229 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| || || ||| | | | | ||||| || Sbjct 230 CAACGTTTAATTTTTGCTGGTAAACAATTGGAAGATGGCAGAAGTTTGAGTGATTATAAT 289 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| |||||||| || | |||||||| || ||||| | || || Sbjct 290 ATTCAGAAAGAATCTACTTTGCATTTAGTACTGAGATTGAGAGGTGG 336 >seq1640 Length=44113 Score = 102 bits (112), Expect = 7e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 22203 TTATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCT 22262 || || |||| || |||||||| ||||||||||||||||| || || || | ||||| Sbjct 43963 TTGTAAATTTTAGAAAATGCAAATATTTGTTAAAACTTTAACTGGAAAGACTATTACTCT 44022 Query 22263 TGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGG 22322 |||||| || | | ||||| | || || | || ||||||||||| || ||||| Sbjct 44023 TGAAGTTGAGCCTAGTGATACTATTGAAAATGTTAAGGCGAAAATTCAAGATAAAGAGGG 44082 Query 22323 TATTCCACCCGATCAACAACGTCTTATATTT 22353 ||||| || |||||||||||| | || ||| Sbjct 44083 AATTCCTCCAGATCAACAACGTTTAATTTTT 44113 >seq2489 Length=37580 Score = 93.3 bits (102), Expect = 4e-14 Identities = 278/422 (66%), Gaps = 18/422 (4%) Strand=Plus/Minus Query 128824 AAATAGTACATGCCTGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAAC 128883 ||||| |||||||| || |||||||| |||||||||||| | || | | ||||| Sbjct 25803 AAATAATACATGCCAGTCTTCAAACCCTTTTTCCAAGTGTAAAAATGTAAACTTGTCAAT 25744 Query 128884 AATGCGTAGGTGGG---TTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAG 128940 || || | || |||| | | |||||| | |||||||||||||| ||| | Sbjct 25743 TTAGCATAATTTGGACTTTGAAT---ATGAATATTCATAGATTGACTTTGATCTATATAA 25687 Query 128941 GGGCCGCGATCGGCAGCCATACCAATCAAATT--TTTCACTTTCATTTCCCACACCGTTT 128998 | | ||| || |||||| | || |||| |||| | |||||||| || |||| Sbjct 25686 ATAGCTCTATCAGCTGCCATATCTAT--AATTAATTTCTGTGGTATTTCCCATACAGTTT 25629 Query 128999 TGTAAAGCTCTCTCACGTGTTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTG 129058 |||| | || ||| | || ||||| ||||| | || | || | || Sbjct 25628 TGTACAAATCCTTCAATTCTTGGCTAATTTCATCAATATGTTGAATTGAACCATAACCTG 25569 Query 129059 CAATAATTTTGTTTCGCATCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCA 129118 || | ||| |||| ||| || || | | | | || | ||||| || ||| Sbjct 25568 ATATCAGTTTATTTCTCATGGTTTTATTCCAAAGACCTAATTGAGTTAAATC-TC--TCA 25512 Query 129119 AGTATTTG----TTTATTACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTG 129174 | || || || | ||||||||| ||||| | ||||| || |||||||||| ||| Sbjct 25511 A-TAAATGCGAATTGACTACTTGAAATTCACCAGATAAAACCCGACGAACGTAAAGGTTA 25453 Query 129175 TTGGTGAACGGCTCAAACGATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGC 129234 | || || | |||| ||||| || || ||||| ||||||||||||| ||| || ||| Sbjct 25452 CTTGTAAATGCTTCAATTGATTCGTTATTTCCTAAAATTTGAGCCGTTGACGCTGTAGGC 25393 Query 129235 AT 129236 || Sbjct 25392 AT 25391 Score = 86.0 bits (94), Expect = 5e-12 Identities = 141/203 (69%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 129985 GGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACC 130044 ||||| || | |||| || |||| ||| || ||| ||||||||||||| |||| | Sbjct 23336 GGACAAATAAGTGTCCAATTTTCATCTTTTTCTACACGTCTCATAAACAAATCAGGTATC 23277 Query 130045 CACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGT 130104 |||| || || || ||||||| || ||| | || | | ||| || ||| || | Sbjct 23276 CACAATGCATAGAATAAATCTCTCGTTTTGGTTTCATTAGAACCAATATTAGTGCGCAAT 23217 Query 130105 TCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTC 130164 ||| ||||| |||| || || ||||| ||||| | |||||| || ||||| || Sbjct 23216 GTAAGAAAATCAAAAATATCAGCATGCCAAGGTTCTAAATAAATGGCGATTGCTCCGGGT 23157 Query 130165 CGTTTG---CCCCCTTGGTCAAC 130184 | |||| || |||||||| || Sbjct 23156 CTTTTGTTACCACCTTGGTCTAC 23134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419709993668800