Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq3020 105 6e-18 >seq3020 Length=37895 Score = 105 bits (116), Expect = 6e-18 Identities = 188/272 (69%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 20198 TGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGC 20257 || |||||||| | ||||||||||| || || ||| | | ||||| |||||| ||| Sbjct 25064 TGAGCATCTCCAATAGTGTGAATAAATTCACCAGGTTCAGTATTAGTAATATGAGCCAGC 25005 Query 20258 ATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCC 20317 ||| ||||||| || |||||||| ||||| || || || || || | ||||| ||| | Sbjct 25004 ATAAAAGTTAAAAGAGAATAGCTAGCAATATTGAATGGGACACCAAGTCCCATATCTGCA 24945 Query 20318 GACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATA-ACAA 20376 || | || || | |||||| || | || | | ||||| |||||||| | |||| Sbjct 24944 GATCGTTGGTATAACTGACACGATAACTTGTTATTACAAACATAGAATTGACAGAGACAA 24885 Query 20377 GTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGAT 20436 || || || || | |||||| || ||| ||| | |||||| | | | | | || Sbjct 24884 -TGGCATGGGGGTAACGCCATATCCGGCAAATCCATAGCGTTCCATGAAGATAATACAAT 24826 Query 20437 TCTTCTATCGTGCGGATTATTTTTTATTAAAT 20468 ||| || | ||| | ||||| ||||||| Sbjct 24825 TCTCCTGCTATCCGGGTCGTTTTTAATTAAAT 24794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441353379596800