Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2628 91.5 3e-13 >seq2628 Length=67642 Score = 91.5 bits (100), Expect = 3e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 242893 GATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGGACCACCGAGGAAGTTCCT 242952 ||| | ||| | ||||| || |||||||| || | |||||||| || || |||||| | Sbjct 40941 GATCTTTGGAAAATGTACAAAAAGGCAGTAGCCTCTTTTTGGACAACTGATGAAGTTGAT 41000 Query 242953 CTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGACGACGAACGTCATTTCATC 243012 | | | ||||| || ||| ||| ||| | |||||||||||| | ||||| || Sbjct 41001 TTAAGCCATGACGTTTCTGATTGGAACGATAAATTAAATGACGACGAAAGGCATTTTATT 41060 Query 243013 AAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTGATGGAAAA 243062 |||||| || | | |||||| |||| |||||| || |||| ||||| Sbjct 41061 AAACACGTTTTGGCTTTTTTTGCAGCAAGCGATGGCATCGTGAATGAAAA 41110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102830260112000