Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2377 104 2e-17 seq1640 84.2 2e-11 >seq2377 Length=22370 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | |||||| || |||| ||| | || |||||||| ||||| || ||||| Sbjct 336 CCACCTCTCAATCTCAGTACTAAATGCAAAGTAGATTCTTTCTGAATATTATAATCACTC 277 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | | | | ||||| | || || || ||| |||| | || || ||||| |||||| Sbjct 276 AAACTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATTAAACGTTGTTGGTCTGGAGGA 217 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| |||||| |||||| || | |||||| | | || ||| Sbjct 216 ATCCCTTCCTTATCTTGAATTTTTGCTTTTACATTTTCAATTGTATCGCTAGGTTCAACT 157 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||| || ||||| | ||||| || ||||||||||| Sbjct 156 TCAAGGGTAATGGTTTTTCCGGTAAGTGTTTTAACAAAAATTTGCAT 110 >seq1640 Length=44113 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 64311 AAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAA 64370 |||| | || || || || ||||||||||| ||||| ||||| ||||| ||| ||| Sbjct 44111 AAATTAAACGTTGTTGATCTGGAGGAATTCCCTCTTTATCTTGAATTTTCGCCTTAACAT 44052 Query 64371 CCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTA 64430 || | ||||||| | || ||||| | ||| | ||||| || || |||||||| | Sbjct 44051 TTTCAATAGTATCACTAGGCTCAACTTCAAGAGTAATAGTCTTTCCAGTTAAAGTTTTAA 43992 Query 64431 CGAAAATTTGCATTTT 64446 | || ||||||||||| Sbjct 43991 CAAATATTTGCATTTT 43976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499622815628800