Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2377 140 3e-28 >seq2377 Length=22370 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 |||| |||| ||||| || ||||| || || ||||||||||| || | || | | Sbjct 324 CTCAGTACTAAATGCAAAGTAGATTCTTTCTGAATATTATAATCACTCAAACTTCTGCCA 265 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || ||||||||||| || || | || || ||||| ||||| || ||||| ||||| ||| Sbjct 264 TCTTCCAATTGTTTACCAGCAAAAATTAAACGTTGTTGGTCTGGAGGAATCCCTTCCTTA 205 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||||||| ||| | ||| | || ||| || || ||||| || |||| Sbjct 204 TCTTGAATTTTTGCTTTTACATTTTCAATTGTATCGCTAGGTTCAACTTCAAGGGTAATG 145 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| || ||||| |||||||||||||| Sbjct 144 GTTTTTCCGGTAAGTGTTTTAACAAAAATTTGCAT 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451983311859200