Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1444 315 5e-80 seq1980 242 3e-58 seq1290 158 9e-33 seq780 118 8e-21 seq1811 114 1e-19 seq2489 91.5 1e-12 seq445 91.5 1e-12 >seq1444 Length=49888 Score = 315 bits (348), Expect = 5e-80 Identities = 816/1222 (67%), Gaps = 35/1222 (3%) Strand=Plus/Plus Query 517090 AGTATAATTTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTTCTTGTTATCTGCTTC 517149 || ||| || || | ||||||||||| || | | |||||||| | ||||| ||| Sbjct 45274 AGCATAGTTCTCCAGTTCATTTTTAGCGTCGATTGAGGCTTTTTTAATATTATCCTCTTT 45333 Query 517150 TTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCG 517209 |||||||| |||||| || ||| |||||| ||||||| || ||||| ||| Sbjct 45334 TTCAAATTTTTTAGCCTCATTAACCATTCTGTCAATTTCTGATT--GAGAA-CTTTTTTT 45390 Query 517210 ATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATT 517269 | || |||||| | | || || || ||| | | |||| | || || || || Sbjct 45391 TTCGTTGGTAATAATTAAATCTTTTTTTTGGTTGGCTTCTTTACACTCTGCCGTAACCTT 45450 Query 517270 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 517329 | ||||||||| || |||| ||||||||||||||| | || || | ||||| || | Sbjct 45451 CAAAATACCATTAGCGTCCATATCAAATGTGACTTCTACTTTGGGTCCGCCTCTTGGACC 45510 Query 517330 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 517389 || ||||| || |||| |||| |||| | || ||| ||||| | || | Sbjct 45511 CGGAGGGATACCAGTTAAATCAAATTTTCCTAATAAATGATTGTCTTTTGACAACGGCCT 45570 Query 517390 TTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATAC 517449 ||| || || |||||| || | |||| ||| ||| ||||| | || || ||||| Sbjct 45571 TTCTCCTTCATAAATTTCAATTGAAACTGCAGGTTGGTTATCGGCGTACGTCGTAAACGA 45630 Query 517450 TCTGGAT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCAC 517508 ||| || ||||| ||||| || || || | |||||||| || ||||| | | | Sbjct 45631 -CTGCATCTTTTTGGTGGGAATAGTGGTATTACGTTCAATAATTTTAGTCATTACAGAGC 45689 Query 517509 CTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA--TTTTGAAG 517566 ||| ||| | || | || | ||||| || |||| || |||||| | ||||| Sbjct 45690 CTGAAGTTGTAATGCCCATCGATAAAGGAGCTACGTCAAGTA--ACAATAAATCTTGAAC 45747 Query 517567 TTTTTCATCAGTTTGA---CCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAAC 517623 ||||||| ||||| ||| | | ||| || ||||||| || |||||||| || || Sbjct 45748 TTTTTCAC---TTTGATCGCCAGCCATAATCGCAGCTTGAACTGCCGCACCATACGCGAC 45804 Query 517624 AGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAG--- 517680 ||||| || ||||||| | | ||||| |||||||||||| || || || ||||| Sbjct 45805 GGCTTCGTCTGGATTAATGCTATGATTTAATTTTTTACCATTAAAGAATTTAGAAAGCAA 45864 Query 517681 AAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTG 517740 | ||| || || ||||| |||| || || ||||| | ||||| || || | || Sbjct 45865 ACTTTGAATT---TTTGGAATTCGAGTAGAACCACCAACAAGAACAATATCGTGTATTTG 45921 Query 517741 TGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCT-CTAA 517799 |||||| | | |||||| || |||| || || || || || ||| | | Sbjct 45922 ACTTTTATCAAATCCTGAATCACGCAATGCTTTGTCGACCGGGTCGAG-TGTGCTGGTGA 45980 Query 517800 ACAAGTC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAAT 517857 | | || || | ||| ||||| ||| ||||| ||| | || | ||| || || Sbjct 45981 ATATATCATTGCATAAA--TCTTCCAATCTAGCTTGAGTCATGGTAGTCTGATAGTCGAT 46038 Query 517858 TCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTT 517917 || || |||| || || | | || ||||||| | ||| |||| ||||| Sbjct 46039 ACCATCAAACACTGAGTCTATGTTGATTATAGTTTGCGATTCAGAGGATAAATTTCGTTT 46098 Query 517918 AGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT-GATTCAAATCTG 517976 |||||||| ||| | || | | | || | ||| || || || | | | |||| Sbjct 46099 GGCACGTTCGCATTCAGTTTTCAAACGACGCATAGCTCTT-CTATTTCCAGTAATATCTT 46157 Query 517977 TTTTATATTTTCTCTTG-AAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAAT 518033 | || | ||||| ||| ||||||| || || || | || | | | |||| | Sbjct 46158 TCTTGT-GTTTCTTTTGAAAATCTTGGACGCA--GTGCTGCACTAATCTCTCGTCAATGT 46214 Query 518034 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 518093 ||||||||||||| | ||| | ||| | ||| | | |||||| | | || | ||| Sbjct 46215 CTTCACCTCCCAAATGAGTGTCTCCAGCCGTTGATTTTACTTCATATACACCTCCGACAA 46274 Query 518094 GAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 518153 || ||||| || |||||| || ||||| ||||| |||||||| | || | | | Sbjct 46275 TAGTCAAAATAGAAACATCAAATGTGCCACCTCCCATGTCAAAAATTAAAACGTGTCTAT 46334 Query 518154 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 518213 ||| ||| |||| || | |||||||| | ||||||||| |||||||| || | || Sbjct 46335 CTTCGTCGCCAATTTTGTCCAACCCATACGCTAGAGCAGCAGCCGTTGGTTCGTTCAAAA 46394 Query 518214 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 518273 | ||||||||||||| ||||||||| | ||||||||| || ||||||||||| || Sbjct 46395 TCCTCAAAACATTAATACCAGCAATAGCACATGCATCTTTTGTAGCTTGTCTTTGACCAT 46454 Query 518274 CGTTAAAATATGCAGGAACAGT 518295 | || ||||| || ||||| || Sbjct 46455 CATTGAAATAGGCTGGAACTGT 46476 >seq1980 Length=651 Score = 242 bits (268), Expect = 3e-58 Identities = 417/602 (69%), Gaps = 19/602 (3%) Strand=Plus/Plus Query 517141 ATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAA 517200 |||| ||| |||||| | ||||||||| ||| |||||| ||||||| | || || | Sbjct 12 ATCTTCTTTTTCAAACTTTTTAGCTTCATTAACCATTCTTTCAATTTCAGATTGGGAAAC 71 Query 517201 TCTTCCGCGATTATTAGTAATAGTAATAT---TCTTGGATTTGTTTG--TTGATTTATCA 517255 | || || | | |||||||||| || |||| |||||| ||| || Sbjct 72 TTTTTT---ATCACTTGTAATAGTAACATCAGTCTTAACGTTGTTTTCTTTGCATT---- 124 Query 517256 GCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGG 517315 | ||||| | || | |||||| || ||||| | |||||| || |||||||||||||| Sbjct 125 -CAGCAGTAATTTTCATAATACCGTTAGCATCAATATCAAAGGTAACTTCAATTTGAGGA 183 Query 517316 ACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCT 517375 || |||| | |||||||| || || || | ||| |||| | ||| ||| Sbjct 184 ACACCTCGTGGTGCAGGTGGTATTCCGGTTAAGTCAAAACGACCCAACAAGTGATTGTCT 243 Query 517376 TTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAA 517435 ||||| | | |||||| || ||| ||||||| ||||||||| ||||||||||||||| | Sbjct 244 TTAGTCATTGGTCGTTCTCCTTCGTAAATTTGAATAGTAACTGCAGTTTGATTATCTGCA 303 Query 517436 TAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495 || |||| |||| | |||||| ||||||||| ||||| || | ||| || Sbjct 304 TACGTTGAGAATATTTGTTGTTTTTTTGTAGGAATTGTACAATTTCTTTCTACAATTTTA 363 Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 | ||| | | |||| ||||| | || | ||| ||||| || ||||| | | | Sbjct 364 GACATGACATCACCAGCTGTGCAGATTCCCAAAGATAGAGGTGTAACATCCAACAATAAT 423 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTG---ACCAACAAGAATAGCTGCTTGAATAGCAGCA 517612 | || ||||| ||| ||| |||| |||| | ||| || ||||||| ||| ||| Sbjct 424 AGATCTTGAACCTTT---TCACTTTGGTCACCACTCATAATTGCGGCTTGAACAGCGGCA 480 Query 517613 CCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAA 517672 ||||| || ||||||||||||||||| | | | ||| | |||||||||||| || ||| Sbjct 481 CCATAAGCTACAGCTTCATCAGGATTGATGCTGTGATTCAATTTTTTACCATTAAAGAAA 540 Query 517673 TTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 517732 | ||| | | || | | ||||| || | || ||||| ||||| || |||| ||| Sbjct 541 TCTGACAACAATTTTTGAATTTTAGGGATTCTAGTAGATCCACCAACCAAAACAACATCA 600 Query 517733 TG 517734 || Sbjct 601 TG 602 >seq1290 Length=30651 Score = 158 bits (174), Expect = 9e-33 Identities = 131/160 (82%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 518155 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214 |||||||| | ||||| | ||||| || | ||| ||||||||||| ||||| || | Sbjct 18190 TTTGTCTTCGGCCTTATCTAACCCATAAGCGAGAGCGGCAGCAGTTGGCTCATTTATTAC 18249 Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274 |||||||||||| | |||||||||| |||| |||||||| || ||||| ||||| ||||| Sbjct 18250 TCTCAAAACATTCAAACCAGCAATTTTTCCAGCATCTTTTGTAGCTTGCCTTTGAGAATC 18309 Query 518275 GTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT 518314 ||||||||| || || ||||||||||| |||| | ||||| Sbjct 18310 GTTAAAATAAGCGGGTACAGTAATAACTGCATTATTTACT 18349 Score = 107 bits (118), Expect = 1e-17 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 322239 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 322298 |||| || || || ||||| || |||||||| ||||| |||| | | | ||||| |||| Sbjct 18207 CTAACCCATAAGCGAGAGCGGCAGCAGTTGGCTCATTTATTACTCTCAAAACATTCAAAC 18266 Query 322299 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 322358 | |||||||| ||| ||| || ||||| || || | || |||||||| || |||| Sbjct 18267 CAGCAATTTTTCCAGCATCTTTTGTAGCTTGCCTTTGAGAATCGTTAAAATAAGCGGGTA 18326 Query 322359 CAGTAATAACTGCTTTATT 322377 ||||||||||||| ||||| Sbjct 18327 CAGTAATAACTGCATTATT 18345 Score = 89.7 bits (98), Expect = 4e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 305929 ACGAGGAGATTGATTATGATCTGGGAAAGGAATATTAGATGAAATTAGTCCGAGAATCAT 305988 ||| ||||||||||| |||||||||||||||||| |||| | | || ||| | ||||| Sbjct 14155 ACGTGGAGATTGATTGTGATCTGGGAAAGGAATAATAGAAGCACATACTCCCAATATCAT 14096 Query 305989 ACACGGATGAATTTCACAATGAGTGTA 306015 |||| ||||||||||||||||| || Sbjct 14095 TGACGGGTGAATTTCACAATGAGTATA 14069 >seq780 Length=27146 Score = 118 bits (130), Expect = 8e-21 Identities = 256/374 (68%), Gaps = 17/374 (5%) Strand=Plus/Minus Query 635395 AAAATTATATAATGCTCACAAGGCAGGAACCAAAGAAGGATATAAAT-GTACCCTAATTT 635453 ||||||| | ||||| | || || ||||| ||| || ||| ||| |||| ||||||| Sbjct 14723 AAAATTAGAAGATGCTAATAATGCTGGAACAAAA-AATTCTATTAATTGTACTCTAATTT 14665 Query 635454 TGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAATGTTATTGGAAGAG 635513 | ||||| || ||||| || ||||| | ||| | ||| | |||| | || | Sbjct 14664 TAACAGAAGGGGATTCGGCGAAAACGCTTGCTGTAAGTGGATTATCTGTTGTCGGGCGTA 14605 Query 635514 ATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTAGTCCTa 635573 || |||||| ||||| || | |||| ||| |||||||||| || || ||| || | Sbjct 14604 ATCTTTATGGTGTTTTTCCGTTACGAGGTAAAGTTTTGAATGTAAGAGAAGCTTCTCACA 14545 Query 635574 aaaaaaTTGCTGATAATGAGGAAATTACAGCAATC--aaaaaaaTTGTTGGACTTGAA-- 635629 || | || || |||| ||||| || |||| | |||||| | ||| ||||| Sbjct 14544 AACAGATCATGGAAAATGCTGAAAT--CAACAATATTATAAAAATCATGGGA-TTGAAAT 14488 Query 635630 -CAAGGAAAAGTTTAT-GAT---GAT---CTCAAAGGTTTACGATATGGTAGTATTATGA 635681 ||| || || | | ||| ||| || ||| |||| ||||||||| || ||| Sbjct 14487 ACAAAGATAAATACGTAGATAGAGATTCACTAAAAAGTTTGAGATATGGTAAAATATTGA 14428 Query 635682 TTCTTGCTGATCAAGATGTTGATGGGTACCATATCAAAGGATTAATCATGAATTTTATCC 635741 | | | ||||||||| ||||| | |||||| ||||| ||| | || |||||||||| Sbjct 14427 TAATGACAGATCAAGATCAAGATGGATCCCATATTAAAGGTTTATTGATTAATTTTATCC 14368 Query 635742 ATTGTTTTTGGCCA 635755 ||| | |||||| Sbjct 14367 ATTATAACTGGCCA 14354 >seq1811 Length=36824 Score = 114 bits (126), Expect = 1e-19 Identities = 321/490 (66%), Gaps = 16/490 (3%) Strand=Plus/Plus Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308 |||||| ||||| || || | ||||||| || || |||| |||||||| || ||||| Sbjct 8073 TTTATCGGCGGCGGTAACGTGAAGAATAGAGTTAGCGTCCATTTCAAATGTAACCTCAAT 8132 Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368 ||| || || |||||| | || ||| |||| ||||| ||| | |||| || Sbjct 8133 TTGTGGAACACCTCTCGGTGCCTTCTTGATACCTTTCAAATCGAATTTGCCCAATAGATG 8192 Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTC--GAAAATTTGGATAGTAACTACAGTTTGA 517426 || ||||| | | || |||||| || | | | | ||||||||| | ||| Sbjct 8193 GTTGTCTTTGACCATTGATCTTTCACCTTCATGGACACT--GATAGTAACAGTATCTTGG 8250 Query 517427 TTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCA 517486 ||||| | | || | ||||| | | |||||| || || ||||||| | Sbjct 8251 TTATCAGCAGCGGTAGAAAATATTTGAGTTTTTTTGGTTGGTATAACACTGTTTCTGGGA 8310 Query 517487 ATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCA 517546 |||| || ||||| | || || | ||||| | ||| | || | || |||| ||| Sbjct 8311 ATAACTTTTGTCATCACCCCTCCAACAGTTTCGATACCCAAAGTCAATGGGTTGACGTCA 8370 Query 517547 ACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATA 517606 | || |||||| | | | || || | |||| | || | | ||||||| Sbjct 8371 ATTAAAACAATACTGTCAC------CACCATCTGCACCACTCAAAACACCAGCTTGAACT 8424 Query 517607 GCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATT---TAGTTTTTTACCA 517663 ||||| |||||||||| |||||||| || || | || || | | ||| || ||| Sbjct 8425 GCAGCTCCATATGCAATGGCTTCATCGGGGTTGA---TTCCACTGGCTGGTTCCTTTCCA 8481 Query 517664 TTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAAT 517723 || ||||| | | || ||||| || || ||||||||||||| || ||||| || || Sbjct 8482 TTCAAAAATTGTTGAACAAGTTTTCGGACTTTAGGAATACGAGTAGAACCTCCTACCAAA 8541 Query 517724 ACAATTTCAT 517733 || | ||||| Sbjct 8542 ACGACTTCAT 8551 >seq2489 Length=37580 Score = 91.5 bits (100), Expect = 1e-12 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 400503 ACTGTTTGGGAAATTCCTCAAAAATCCATCATTGAAATGGCAGCTGATAGAGCACCTTTT 400562 ||||| |||||||| || || |||| || || || ||||||||||||||||| || | Sbjct 25631 ACTGTATGGGAAATACCACAGAAATTAATTATAGATATGGCAGCTGATAGAGCTATTTAT 25690 Query 400563 GTTGATCAAACTCAGAGTATGAATTTGTACATTGATAAACCTAGTTTTGCAAGATTAAAT 400622 | ||||||| ||| ||||||| | | ||| | | || | || ||| | ||| | Sbjct 25691 ATAGATCAAAGTCAATCTATGAATATTCATATTCAAAGTCCAAATTATGCTAAATTGACA 25750 Query 400623 TCTTGTCTATTTTATGCATGGAGGAAAGGTCTCAAAACCGGTATGTATTATTTGAGATCT 400682 || | ||||| | |||| || ||| | || || || ||||||||||| ||| || Sbjct 25751 AGTTTACATTTTTACACTTGGAAAAAGGGTTTGAAGACTGGCATGTATTATTTAAGAACT 25810 Query 400683 AAACCAGC 400690 ||||| || Sbjct 25811 AAACCTGC 25818 >seq445 Length=13936 Score = 91.5 bits (100), Expect = 1e-12 Identities = 121/163 (74%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 668831 AAATCAATGTCTGAAAGATTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGA 668890 |||||||| ||||||||| || ||||||||| | ||| ||||||| |||||||| Sbjct 4965 AAATCAATAAAACAAAGATTAAAGGGCAAAGAAGGTAGAATTCGAGGAAACTTGATGGGT 5024 Query 668891 AAACGTGTCGATATGTCTGCACGTACAGTTATTACTTCTGATCCCAATATTGC-TCTCAA 668949 ||| | || ||| | || || | || || ||||| | ||||| | || | | | | || Sbjct 5025 AAAAGGGTTGATTTTTCGGCGAGAACTGTGATTACACCAGATCC-ATTACTTCATATTAA 5083 Query 668950 TGAAGTTGGTGTTCCTCTTAT-TATTGCTAAAAATCTTACTTT 668991 | ||||||||||||| ||||| ||||| ||||| | ||||| Sbjct 5084 TCAAGTTGGTGTTCC-CTTATCGATTGCACAAAATATGACTTT 5125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780647726005120