Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1444 179 5e-40 seq2489 114 2e-20 seq780 102 1e-16 >seq1444 Length=49888 Score = 179 bits (198), Expect = 5e-40 Identities = 671/1044 (64%), Gaps = 6/1044 (1%) Strand=Plus/Plus Query 6695 ACATTCAAAATACCATTTGCATCAACATCGAACCTTACAT-TAATTTGTGGTGTACCCCT 6753 || |||||||||||||| || || | ||| || | || | || |||| ||| || || Sbjct 45446 ACCTTCAAAATACCATTAGCGTCCATATCAAATGTGACTTCTACTTTG-GGTCCGCCTCT 45504 Query 6754 CGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTT 6813 || | | || ||||| |||||||||||| | || | |||| || || | | | Sbjct 45505 TGGACCCGGAGGGATACCAGTTAAATCAAATTTTCCTAATAAATGATTGTCTTTTGACAA 45564 Query 6814 CTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGA 6873 | | ||| |||||||| | || ||||| || |||||||| ||||| ||| | Sbjct 45565 CGGCCTTTCTCCTTCATAAATTTCAATTGAAACTGCAGGTTGGTTATCGGCGTACGTCGT 45624 Query 6874 GAA-GATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAA 6932 || || | ||||| || | ||||| || ||||| | ||||| ||||| | Sbjct 45625 AAACGACTGCATCTTT-TTGGTGGGAATAGTGGTATTACGTTCAATAATTTTAGTCATTA 45683 Query 6933 TACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTT 6992 | || |||| | || | || | ||| | ||||| | | || | |||| Sbjct 45684 CAGAGCCTGAAGTTGTAATGCCCATCGATAAAGGAGCTACGTCAAGTAACAATAAATCTT 45743 Query 6993 GAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGA 7052 |||| ||| | || || | | || || ||||| || | ||| || || |||| Sbjct 45744 GAACTTTTTCACTTTGATCGCCAGCCATAATCGCAGCTTGAACTGCCGCACCATACGCGA 45803 Query 7053 CCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACA 7112 | || || || || ||||| | | ||| | || |||||| ||||| | | || | || Sbjct 45804 CGGCTTCGTCTGGATTAATGCTATGATTTAATTTTTTACCATTAAAGAATTTAGAAAGCA 45863 Query 7113 TTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCG 7172 ||||||||| || ||||| || || ||||| || | ||| || || | | || Sbjct 45864 AACTTTGAATTTTTGGAATTCGAGTAGAACCACCAACAAGAACAATATCGTGTATTTGAC 45923 Query 7173 ATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACA 7232 |||||| | ||| || || | || ||| ||||| || || | | ||| | Sbjct 45924 TTTTATCAAATCCTGAATCACGCAATGCTTTGTCGACCGGGTCGAGTGTGCTGGTGAATA 45983 Query 7233 AGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGT 7292 || | || | || || || | || | || |||| || | | || | || | Sbjct 45984 TATCATTGCATAAATCTTCCAATCTAGCTTGAGTCATGGTAGTCTGATAGTCGATACCAT 46043 Query 7293 CGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGC 7352 | | | || || || | || | ||||| | || ||||| |||| || || | Sbjct 46044 CAAACACTGAGTCTATGTTGATTATAGTTTGCGATTCAGAGGATAAATTTCGTTTGGCAC 46103 Query 7353 GCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTAT 7412 | || || | ||| |||||||| | || | || || | |||||||||||| | Sbjct 46104 GTTCGCATTCAGTTTTCAAACGACGCATAGCTCTTCTATTTCCAGTAATATCTTTCTTGT 46163 Query 7413 GTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCAC 7472 |||| || ||| |||| | |||| | | | |||| || | |||||||| | Sbjct 46164 GTTTCTTTTGAAAATCTTGGACGCAGTGCTGCACTAATCTCTCGTCAATGTCTTCACCTC 46223 Query 7473 CCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACA 7532 |||| || || || || || || | ||| |||||| | | |||||| |||| | || | Sbjct 46224 CCAAATGAGTGTCTCCAGCCGTTGATTTTACTTCATATACACCTCCGACAATAGTCAAAA 46283 Query 7533 ACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTT 7592 ||||||||||| || ||||| |||| ||||||||| | |||| |||| ||||| Sbjct 46284 TAGAAACATCAAATGTGCCACCTCCCATGTCAAAAATTAAAACGTGTCTATCTTCGTCGC 46343 Query 7593 TGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATAC-GAAGA 7651 | || || | || ||||| | ||| || ||||||||||| || | ||| | || | Sbjct 46344 CAATTTTGTCCAACCCATACGCTAGAGCAGCAGCCGTTGGTTCGTTCAAAATCCTCAAAA 46403 Query 7652 CAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAG 7711 || || | |||||||||| |||||||| || ||||||| ||| ||| || || Sbjct 46404 CA-TTAATACCAGCAATAGCACATGCATCTTTTGTAGCTTGTCTTTGACCATCATTGAAA 46462 Query 7712 TAGGCCGGGACCGTTACGACCGCG 7735 ||||| || || || || || ||| Sbjct 46463 TAGGCTGGAACTGTGACCACTGCG 46486 >seq2489 Length=37580 Score = 114 bits (126), Expect = 2e-20 Identities = 376/581 (65%), Gaps = 10/581 (2%) Strand=Plus/Minus Query 104355 TTTACTTCGAAGGTAATACATACCCGTTTTTAAACCAGTTTTCCACGCGTACATGTGCAT 104414 |||| ||| | |||||||| || || || ||||| ||||||| | ||| | || | Sbjct 25813 TTTAGTTCTTAAATAATACATGCCAGTCTTCAAACCCTTTTTCCAAGTGTAAAAATGTAA 25754 Query 104415 AGACGAAAGTTTTGAAATTGTTGGACTCTCGAC--GAATAAGTTCATACTTTGACTTTGG 104472 | | | ||| | | ||||||| | | ||||| |||||| ||||||||| Sbjct 25753 ACTTGTCAATTTAGCATAATTTGGACTTTGAATATGAATA--TTCATAGATTGACTTTGA 25696 Query 104473 TCTATATACACACCTCTATCCGCCGCCATATCGATGATTGTTTTTTGACTCATTTCCCAT 104532 |||||||| | | ||||||| || |||||||| || ||| ||| || ||||||||| Sbjct 25695 TCTATATAAATAGCTCTATCAGCTGCCATATCTATAATTAATTTCTGTGGTATTTCCCAT 25636 Query 104533 ACGGTTTTATACAATTCCTTAAGATCATCGGGTATATCAATAATGTTTTGAACAGACCCA 104592 || ||||| ||||| ||||| | || | | || ||| ||| | ||||| || ||| Sbjct 25635 ACAGTTTTGTACAAATCCTTCAATTCTTGGCTAATTTCATCAATATGTTGAATTGAACCA 25576 Query 104593 TTTGCCTTCACCATAAGATCTTTCATTTCCTTCGACCAGAGTCCACGTTCTTTCAAATCG 104652 | | | || || | |||| || ||| || || || | ||||| Sbjct 25575 TAACCTGATATCAGTTTATTTCTCATGGTTTTATTCCAAAGACCTAATTGAGTTAAATCT 25516 Query 104653 TTTACTAAATGTTTGTTTACGACGACAAATTCACCCGCGAGTGTTCGTCTCAAATAGATA 104712 | | |||||| || || || ||||||||| | | || | | || | Sbjct 25515 CTCAATAAATGCGAATTGACTACTTGAAATTCACCAGATAAAACCCGACGAACGTAAAGG 25456 Query 104713 TTGGTCGTATACGGTTCGAAACACTCGTTGTTCCCTAAAATCTGGGATGTGGATGCGGTA 104772 || | ||| | | ||| | | ||||| || |||||||| || | || || || ||| Sbjct 25455 TTACTTGTAAATGCTTCAATTGATTCGTTATTTCCTAAAATTTGAGCCGTTGACGCTGTA 25396 Query 104773 GGCATAGGTGCAAGAAGAAGACTATTCATAGTTCC---TTTCTTAACAAGTTTACGCATG 104829 |||||||||| | || | | ||| || || |||| |||||||| |||| | Sbjct 25395 GGCATAGGTGATAACAGCAAAGAATTTCTAACACCATATTTCATAACAAGTCTACGTAAA 25336 Query 104830 GCATTCCAATCGTATCGACCACTAAACTTTGGGTCTCGATCCCACATATCGAATTGAAGA 104889 ||| ||||||||| ||| || |||| | | ||||| | ||| ||||||| Sbjct 25335 TCATCCCAATCGTACAAACCTTCAA---TTGGTTTTTTCTCCCATAAATCAAATTGAAAT 25279 Query 104890 ATACCTTTACTAAACGGTGACCCCTTAAACGTTTCATAAGG 104930 | |||||| || | ||||| |||| || |||||||| || Sbjct 25278 AAACCTTTGCTGATTGGTGATCCCTGGAAGGTTTCATATGG 25238 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 105227 ATTTTGGTAACGCGATTGATGCGAGATTACATACGGCGGTTTCTTCCTTATCCGTAAACT 105286 |||||||||| || || ||||| | ||| || || || ||||| || || || | | | Sbjct 24547 ATTTTGGTAAAGCAATGGATGCCAAATTGCAGACCGCAGTTTCGTCAGCATTCGAATATT 24488 Query 105287 CCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCGACT 105346 | | |||||||||||| | ||| | || || || ||||||| || || || || | Sbjct 24487 CTATAATTTCTGTACATAGATTACTGCACTTTATAGTTCCAACGTTTTGCTGATTTGATT 24428 Query 105347 TTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATTTAA 105406 | ||| || || || || || | ||||||||| || |||||| |||| || || | Sbjct 24427 TACTATTGCATGCATCCTTATACAACATATATGGTACACCTGTTTCAATTTGTGAATTTA 24368 Query 105407 TAATTGCTTTCCA 105419 |||| || | ||| Sbjct 24367 TAATAGCGTGCCA 24355 >seq780 Length=27146 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 184231 TTTACCCCTAAGCGGAAAAACACCGTAATGATCACGACCAACAACTGAAAGACCAGCAAT 184290 |||||| | | |||||||||||| ||| ||| ||| || ||||| || | ||| | Sbjct 14573 TTTACCTCGTAACGGAAAAACACCATAAAGATTACGCCCGACAACAGATAATCCACTTAC 14632 Query 184291 TGCAAGTGTTTTTGCAGAATCACCTTCGGTAATAATAAGAGTACACTTACCAGAGTGTGT 184350 ||||| ||||| || ||||| ||||| || | ||| |||||||| ||| ||| | | | Sbjct 14633 AGCAAGCGTTTTCGCCGAATCCCCTTCTGTTAAAATTAGAGTACAATTAATAGAATTTTT 14692 Query 184351 GGTACCGGCTTTATTGGCATCGTCGAGTTTTGGAATACC 184389 || || || ||||| ||||| || | ||||||||| || Sbjct 14693 TGTTCCAGCATTATTAGCATCTTCTAATTTTGGAATCCC 14731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635104854156800