Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2377 140 7e-28 seq1640 104 5e-17 >seq2377 Length=22370 Score = 140 bits (154), Expect = 7e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||| || | || | ||| || ||||| |||||||| ||||| | | | Sbjct 331 TCTCAATCTCAGTACTAAATGCAAAGTAGATTCTTTCTGAATATTATAATCACTCAAACT 272 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | || ||||| || || || | |||||||||||||||||||| || Sbjct 271 TCTGCCATCTTCCAATTGTTTACCAGCAAAAATTAAACGTTGTTGGTCTGGAGGAATCCC 212 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || |||||||||||| || || || ||||| || || | ||| |||||||| Sbjct 211 TTCCTTATCTTGAATTTTTGCTTTTACATTTTCAATTGTATCGCTAGGTTCAACTTCAAG 152 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || ||||| || | ||||| || || | |||||| Sbjct 151 GGTAATGGTTTTTCCGGTAAGTGTTTTAACAAAAATTTGCAT 110 >seq1640 Length=44113 Score = 104 bits (114), Expect = 5e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 195016 CGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATG 195075 |||||||| ||||||||||| || ||||| ||||||||||| ||| || || ||||| Sbjct 44103 CGTTGTTGATCTGGAGGAATTCCCTCTTTATCTTGAATTTTCGCCTTAACATTTTCAATA 44044 Query 195076 GTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACT 195135 || || | || |||||||| |||| |||||||| || |||||||| || || | | Sbjct 44043 GTATCACTAGGCTCAACTTCAAGAGTAATAGTCTTTCCAGTTAAAGTTTTAACAAATATT 43984 Query 195136 TGCATTT 195142 ||||||| Sbjct 43983 TGCATTT 43977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109431562379840