Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2377 95.1 8e-15 >seq2377 Length=22370 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| || ||||| |||| || || || | || |||||||||||| ||||| || Sbjct 338 TTCCACCTCTCAATCTCAGTACTAAATGCAAAGTAGATTCTTTCTGAATATTATAATCAC 279 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | |||| |||| |||| ||||| || ||||| |||| ||||| |||||| | | Sbjct 278 TCAAACTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATTAAACGTTGTTGGTCTGGAG 219 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||| ||||| || ||| || ||| || | | || | || | | |||| Sbjct 218 GAATCCCTTCCTTATCTTGAATTTTTGCTTTTACATTTTCAATTGTATCGCTAGGTTCAA 159 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | ||| ||||||||||| || || || || ||||| || |||||| Sbjct 158 CTTCAAGGGTAATGGTTTTTCCGGTAAGTGTTTTAACAAAAATTTGCATA 109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324619673218560