Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2489 228 9e-55 seq2628 134 2e-26 >seq2489 Length=37580 Score = 228 bits (252), Expect = 9e-55 Identities = 336/470 (71%), Gaps = 8/470 (2%) Strand=Plus/Minus Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175 |||||| | ||||||| || || | |||| ||| || ||| || | ||||| ||||| Sbjct 23391 ATATAATCTATCAAATTTTTCACCCCAAACATCATCCAATCCACGAAACTCATTTGGACA 23332 Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235 || | || ||||| ||||| |||| ||| | ||||||| | ||| |||||||| | Sbjct 23331 AATAAGTGTCCAATTTTCATCTTTTTCTACACGTCTCATAAACAAATCAGGTATCCACAA 23272 Query 48236 AGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTG---CCACTATTCCTTTTAAGTT 48291 || ||| |||||||| || ||| || ||| ||||| ||| |||| | | | Sbjct 23271 TGC-ATAGAATAAATCTCTCGTT-TTGGTT--TCATTAGAACCAATATTAGTGCGCAATG 23216 Query 48292 CAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTC 48351 |||||| || | |||||||||||||| ||||||||||| || || ||| | || |||| Sbjct 23215 TAAGAAAATCAAAAATATCAGCATGCCAAGGTTCTAAATAAATGGCGATTGCTCCGGGTC 23156 Query 48352 GTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGA 48411 ||| ||||| ||||| |||| ||||| || || || | |||||| |||||| || | Sbjct 23155 TTTTGTTACCACCTTGGTCTACATATCGAGCTGTGGCGTCAAAAACTCGTAACATAGGAA 23096 Query 48412 CAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTAC 48471 |||| ||||||||| | ||||| ||||| |||||||| || | | || ||| | Sbjct 23095 CAATTCCATTTGATGTTCCATTCGTTCCTTTTATATAACTACCCTTGGATCGAATACAAT 23036 Query 48472 TAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTAT 48531 || || || || ||||| || | || || |||||||| || || | | |||| Sbjct 23035 GTATATTAACTCCGATTCCACCAGCACTCTTGGAAATTAGAGCGCATTGTCTTAATGTAT 22976 Query 48532 CATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 | ||||||||||| || || ||||| ||||| | | ||||| |||||| Sbjct 22975 CGTAAATTCCTTCAATGCTGTCATCCTTCATAGTAAGAAGAAAGCAACTA 22926 Score = 214 bits (236), Expect = 2e-50 Identities = 329/464 (71%), Gaps = 13/464 (3%) Strand=Plus/Minus Query 47009 TTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCAT 47068 ||| |||| |||||||||||| |||||||| ||||| |||| || ||||| | Sbjct 25813 TTTAGTTCTTAAATAATACATGCCAGTCTTCAAACCCTTTTTCCAAGTGTAAAAATGTAA 25754 Query 47069 ACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATC 47128 ||| || ||||||| |||| | || | |||||||||||| | ||||||||| ||||| Sbjct 25753 ACTTGTCAATTTAGCATAATTTGGACTTTGAATATGAATATTCATAGATTGACTTTGATC 25694 Query 47129 AATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATAC 47188 ||| | | ||||||||||||||||||||| ||| | | |||||||| |||||||| Sbjct 25693 TATATAAATAGCTCTATCAGCTGCCATATCTATAATTAATTTCTGTGGTATTTCCCATAC 25634 Query 47189 TGTTTTATA-AATTTGTTTAATGTCTTCTGGGAGATT-----AGTATTTTGAATAGATCC 47242 ||||| || || | || ||| ||| ||| ||| | ||| |||||| || || Sbjct 25633 AGTTTTGTACAAATCCTTCAAT-TCT--TGGCTAATTTCATCAATATGTTGAATTGAACC 25577 Query 47243 TCCgttttctataattttgttttttaattcatttga--ccaaagttttcgttcagttaat 47300 | ||| | ||| ||| | | | ||| | |||||| | || |||||| Sbjct 25576 ATAACCTGATATCAGTTTATTTCTCA--TGGTTTTATTCCAAAGACCTAATTGAGTTAAA 25519 Query 47301 gtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATAT 47360 | | || | ||| | ||| || | ||||||||| ||||||| || | ||| || Sbjct 25518 TCTCTCAATAAATGCGAATTGACTACTTGAAATTCACCAGATAAAACCCGACGAACGTAA 25459 Query 47361 ATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCT 47420 | ||||||||| ||| ||| || ||||| |||||||| ||||||||||| ||||| ||| Sbjct 25458 AGGTTACTTGTAAATGCTTCAATTGATTCGTTATTTCCTAAAATTTGAGCCGTTGACGCT 25399 Query 47421 GTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTT 47464 |||||||| | || | | || |||||| || |||||||| Sbjct 25398 GTAGGCATAGGTGATAACAGCAAAGAATTTCTAACACCATATTT 25355 >seq2628 Length=67642 Score = 134 bits (148), Expect = 2e-26 Identities = 170/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 ||||| |||||||| || || ||||| || ||||||||||| || || || ||||||||| Sbjct 41116 ACCAAGTTTTCATTCACGATGCCATCGCTTGCTGCAAAAAAAGCCAAAACGTGTTTAATA 41057 Query 19405 AAATGTTTTTCATCTGAGGTTAATGTA---TTCCAATCATTAATATCTTTAGATAAATCT 19461 ||||| |||| || ||||| || ||||||||| || || | |||||| Sbjct 41056 AAATGCCTTTCGTCGTCATTTAATTTATCGTTCCAATCAGAAACGTCATGGCTTAAATCA 40997 Query 19462 ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGA 19521 ||||| ||| |||||||||||| || |||| ||||| ||||| ||||| | |||| Sbjct 40996 ACTTCATCAGTTGTCCAAAAAGAGGCTACTGCCTTTTTGTACATTTTCCAAAGATCATCG 40937 Query 19522 TATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTC 19574 |||| || ||||| || || ||| |||| | ||| || | || ||||| Sbjct 40936 TATTTAATGGGAAACATGACGTATCGTTTTTCTTCTTCATTTAACATGGGTTC 40884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562084067212800