Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1980 262 3e-64 seq1444 242 3e-58 seq2377 136 3e-26 seq1290 107 2e-17 seq1186 105 5e-17 seq1640 95.1 1e-13 seq780 89.7 4e-12 seq1811 86.0 5e-11 >seq1980 Length=651 Score = 262 bits (290), Expect = 3e-64 Identities = 358/493 (73%), Gaps = 9/493 (2%) Strand=Plus/Minus Query 552102 AAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGC 552161 ||| ||||| | ||||| |||| | |||||||||||||| ||||| |||||||||| Sbjct 613 AAAGCCAAATT-CATGATGTTGTTTTGGTTGGTGGATCTACTAGAATCCCTAAAATTCAA 555 Query 552162 GAAATGTTA--AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATG 552219 || |||| || | || ||| |||||||||||||| ||| | || | ||||| |||| Sbjct 554 AAATTGTTGTCAGAT-TTCTTT-AATGGTAAAAAATTGAATCACAGCATCAATCCTGATG 497 Query 552220 AGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGG--ACAAACTGATGA 552277 | ||||| || ||||||||||| ||||||| || ||| | ||| || || ||| Sbjct 496 AAGCTGTAGCTTATGGTGCCGCTGTTCAAGCCGCAATTATGAGTGGTGACCAAAG--TGA 439 Query 552278 AAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGT 552337 ||| | ||| || | || | | |||||||| ||||||||| | || | |||| Sbjct 438 AAAGGTTCAAGATCTATTATTGTTGGATGTTACACCTCTATCTTTGGGAATCTGCACAGC 379 Query 552338 TGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCG 552397 ||| | | | ||| |||| || | || |||||| ||| |||||| |||||| | Sbjct 378 TGGTGATGTCATGTCTAAAATTGTAGAAAGAAATTGTACAATTCCTACAAAAAAACAACA 319 Query 552398 TGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGA 552457 |||| || |||||| |||||||||||||||| ||||| |||||||||| |||||||| Sbjct 318 AATATTCTCAACGTATGCAGATAATCAAACTGCAGTTACTATTCAAATTTACGAAGGAGA 259 Query 552458 AAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCC 552517 | || | | |||||||| ||| | | ||| |||| | ||| || || || || Sbjct 258 ACGACCAATGACTAAAGACAATCACTTGTTGGGTCGTTTTGACTTAACCGGAATACCACC 199 Query 552518 TGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTT 552577 ||| || || || || || |||||||||||||| || ||||| ||||| || || ||| | Sbjct 198 TGCACCACGAGGTGTTCCTCAAATTGAAGTTACCTTTGATATTGATGCTAACGGTATTAT 139 Query 552578 GAATGTGACTGCT 552590 ||| | |||||| Sbjct 138 GAAAATTACTGCT 126 >seq1444 Length=49888 Score = 242 bits (268), Expect = 3e-58 Identities = 482/704 (68%), Gaps = 16/704 (2%) Strand=Plus/Minus Query 551894 AGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTAC 551953 |||| | |||||| | | ||||| |||||| | ||||||||| | | || |||| | Sbjct 46135 AGCTATGCGTCGTTTGAAAACTGAATGCGAACGTGCCAAACGAAATTTATCCTCTGAATC 46076 Query 551954 TCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTC 552013 ||||| | || | |||| ||| | ||||| || || || ||| | || | || | Sbjct 46075 GCAAACTATAATCAACATAGACTCAGTGTTTGATGGTATCGACTATCAGACTACCATGAC 46016 Query 552014 GAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGA 552073 || | ||| |||||| | || |||| | || | | ||| | || || || || Sbjct 46015 TCAAGCTAGATTGGAAGATTTATGCAATGATATATTCACCAGCACACTCGACCCGGTCGA 45956 Query 552074 ACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGG 552133 ||| || | |||||| |||||||| || |||| || ||||| |||||||| Sbjct 45955 CAAAGCATTGCGTGATTCAGGATTTGATAAAAGTCAAATACACGATATTGTTCTTGTTGG 45896 Query 552134 TGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTC---AATGGTAA 552190 ||| ||||| ||||||| ||||||| ||| || |||| | ||| |||||||| Sbjct 45895 TGGTTCTACTCGAATTCCAAAAATTC---AAAGTTTGCTTTCTAAATTCTTTAATGGTAA 45839 Query 552191 AAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGC 552250 |||||||||| | || |||||||||| || || || || |||||||| ||| ||||||| Sbjct 45838 AAAATTAAATCATAGCATTAATCCAGACGAAGCCGTCGCGTATGGTGCGGCAGTTCAAGC 45779 Query 552251 AGCTATTCTTTCTGGACAAACTGA-TGAAAAACTACAAAAT--ATTGT-ACTTGTAGATG 552306 || ||| | |||| | | | | ||||||| | ||| || ||||| ||||| | | Sbjct 45778 TGCGATTATGGCTGG-CGATCAAAGTGAAAAAGTTCAAGATTTATTGTTACTTG---ACG 45723 Query 552307 TTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATA 552366 | ||||| |||| | || | ||| || | | |||||||| |||| || Sbjct 45722 TAGCTCCTTTATCGATGGGCATTACAACTTCAGGCTCTGTAATGACTAAAATTATTGAAC 45663 Query 552367 GAAATACTACTATTCCTTGTAAAAA-ATCTCGTGTATTTTCTACGTATTCAGATAATCAA 552425 | ||||| |||||||| ||||| || || ||| | ||||| | ||||| ||| Sbjct 45662 GTAATACCACTATTCCCACCAAAAAGATGCAGTCG-TTTACGACGTACGCCGATAACCAA 45604 Query 552426 ACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAA 552485 |||| ||| ||||| |||||| |||||||||||| || | ||||| ||| || | Sbjct 45603 CCTGCAGTTTCAATTGAAATTTATGAAGGAGAAAGGCCGTTGTCAAAAGACAATCATTTA 45544 Query 552486 CTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAA 552545 | || | ||| ||||| ||||| ||||| | ||| | || | ||| || | ||| Sbjct 45543 TTAGGAAAATTTGATTTAACTGGTATCCCTCCGGGTCCAAGAGGCGGACCCAAAGTAGAA 45484 Query 552546 GTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 || || || ||||| || || ||||| |||||||| || || || Sbjct 45483 GTCACATTTGATATGGACGCTAATGGTATTTTGAAGGTTACGGC 45440 >seq2377 Length=22370 Score = 136 bits (150), Expect = 3e-26 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 563263 AGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCT 563322 ||||| | ||| | ||| |||||| |||||| |||||| | | |||| |||| Sbjct 321 AGTACTAAATGCAAAGTAGATTCTTTCTGAATATTATAATCACTCAAACTTCTGCCATCT 262 Query 563323 TCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCT 563382 || | |||||| || |||||||| | | ||| || || |||||||| ||||| |||||| Sbjct 261 TCCAATTGTTTACCAGCAAAAATTAAACGTTGTTGGTCTGGAGGAATCCCTTCCTTATCT 202 Query 563383 TGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTT 563442 ||||||||| |||||| ||||||||||| | | | ||| || |||| ||| Sbjct 201 TGAATTTTTGCTTTTACATTTTCAATTGTATCGCTAGGTTCAACTTCAAGGGTAATGGTT 142 Query 563443 TTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || ||||| |||||||| |||||||||||| Sbjct 141 TTTCCGGTAAGTGTTTTAACAAAAATTTGCATA 109 >seq1290 Length=30651 Score = 107 bits (118), Expect = 2e-17 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || |||||||| || |||||||| || || ||| | |||||||| ||||||| Sbjct 18341 ATGCAGTTATTACTGTACCCGCTTATTTTAACGATTCTCAAAGGCAAGCTACAAAAGATG 18282 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| |||||||| | |||||| | | | || ||||| || |||||||| || | Sbjct 18281 CTGGAAAAATTGCTGGTTTGAATGTTTTGAGAGTAATAAATGAGCCAACTGCTGCCGCTC 18222 Query 550518 TTGCATATGGACTTGATAA 550536 | || ||||| | ||||| Sbjct 18221 TCGCTTATGGGTTAGATAA 18203 Score = 89.7 bits (98), Expect = 4e-12 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 345201 ATATAATCCCATAGCTTGTCTAGCT-TGATTGTATTGGAAAATACCACGAGGTGATTGAT 345259 ||| | ||||||||||||| || | || | |||| | || ||| || ||||||| Sbjct 14200 ATAAATTCCCATAGCTTGTTTACCCATGGCAG-ATTGATATGTATTACGTGGAGATTGAT 14142 Query 345260 TGTGATCTGGGAACGGAATATTCGAAGAAATTAATCCCAAAATCATACAAGGATGTATTT 345319 ||||||||||||| |||||| | |||| | || |||||| ||||| | || || |||| Sbjct 14141 TGTGATCTGGGAAAGGAATAATAGAAGCACATACTCCCAATATCATTGACGGGTGAATTT 14082 Query 345320 CACAATGTGTATA 345332 ||||||| ||||| Sbjct 14081 CACAATGAGTATA 14069 >seq1186 Length=49523 Score = 105 bits (116), Expect = 5e-17 Identities = 134/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 367546 ATTGGAAGATGGATTGACGTAAAAAATGAATATAAAACAATGGATACTAATTTCATGGAA 367605 ||||||||||||||||| | ||||| || || ||||||||| || | || ||||||| Sbjct 45872 ATTGGAAGATGGATTGATTTTAAAAACGATTACAAAACAATGTATTGTTCTTACATGGAA 45931 Query 367606 TCTGTTATTTGGGCATTTAAACAATTATACGAACGCGGTA-TGATTTTTGAAGGTTATAA 367664 || ||| ||| |||||| || | ||| ||| || | | || | | |||||||| Sbjct 45932 TCAGTTTGGTGGATATTTAAGGAAATGTAC-AACAAGGGACTCATCTATTGTGGTTATAA 45990 Query 367665 AGTAATGCCATATTCAACTGGTTGTAATACTGCTTTGTCACATTTTGAAGCCAAACAAAA 367724 | | ||||||| ||| ||||||||| |||| || | || |||| ||||| |||||| Sbjct 45991 AATTATGCCATTTTCTACTGGTTGTTGTACTCCTCTATCCAATTTCGAAGCTGGACAAAA 46050 Query 367725 TT 367726 || Sbjct 46051 TT 46052 >seq1640 Length=44113 Score = 95.1 bits (104), Expect = 1e-13 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 563340 AAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTAC 563399 |||||| | | ||| ||||| ||||||||||| ||||||||||||||||| || || Sbjct 44113 AAAAATTAAACGTTGTTGATCTGGAGGAATTCCCTCTTTATCTTGAATTTTCGCCTTAAC 44054 Query 563400 TGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTT 563459 ||||| |||||| | | | ||| ||||||| ||| || ||||| | |||||| Sbjct 44053 ATTTTCAATAGTATCACTAGGCTCAACTTCAAGAGTAATAGTCTTTCCAGTTAAAGTTTT 43994 Query 563460 AACGAAAATTTGCAT 563474 ||| || |||||||| Sbjct 43993 AACAAATATTTGCAT 43979 >seq780 Length=27146 Score = 89.7 bits (98), Expect = 4e-12 Identities = 191/281 (68%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 428102 CCGGTTCCAATTCCTTCTGTACCATTTACAAGAATCATTGGAATGACTGGTGCATAATAT 428161 || |||||||| ||||| |||||| || | |||||| || | | || |||| ||| Sbjct 13464 CCAGTTCCAATACCTTCACAACCATTAACCAAAATCATGGGTAAAATGGGGACATAGTAT 13523 Query 428162 TGTGGTTCAATCATTTTATTATCTTCATATTGTAAATGTAA-AATATCAAAATCAT--GC 428218 | ||||| | | | |||| ||||| ||| | ||| |||| | ||| | | Sbjct 13524 TTGGGTTCTGTTTTAAAAGTATCGTCATAC-GTATAACTAAGAATACTATCATCTTCAGG 13582 Query 428219 TCGATAAATAtttttttAGCCAATTCATCAAGTTGTGTAAAGATATATCTTGCGCTTGCG 428278 || |||| ||||| || | ||| || || || ||||||| | || || Sbjct 13583 TC--TAAAAATTTTACGAGTAATGGCATTGAGACAAGTGAAAATATATCGAGGACTAGCT 13640 Query 428279 GAATCTTTACCTCCTGACATTCTAGTTCCAAATTGTCCATTAGGCATCAATAAATTAATA 428338 | |||||| ||||| | | || ||| |||||||| ||||| ||||| |||| ||||||| Sbjct 13641 GCATCTTTTCCTCCAGCTAATCGAGTACCAAATTGACCATTTGGCATTAATAGATTAATA 13700 Query 428339 TTATTACTTCCCACATAATTTTGGGCCATATTAACAATGGT 428379 |||||||| || || ||| || |||| ||| | ||| || Sbjct 13701 TTATTACTGCCAACGAAATCATGAGCCAAATTTATAATTGT 13741 >seq1811 Length=36824 Score = 86.0 bits (94), Expect = 5e-11 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 ||||||| |||||||| |||||||| | |||||||||||||| ||||| || || | Sbjct 9186 TAACTGTTCCAGCATACTTTAATGATGCTCAACGTCAAGCTACAAAAGACGCAGGTAAAA 9127 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 |||||||||| ||||| | |||||||| ||||| Sbjct 9126 TTGCTGGACTAAATGTCAAGAGAATTATCAACGAACC 9090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029109846524800