Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2628 232 8e-56 >seq2628 Length=67642 Score = 232 bits (256), Expect = 8e-56 Identities = 652/1012 (64%), Gaps = 128/1012 (13%) Strand=Plus/Minus Query 36865 TACTATTCATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCT 36924 |||| | ||| || || ||| || |||||||| ||||||| ||| ||||| ||||||| Sbjct 41920 TACTGTCCATGACACCAGATTTCTGGTATTCTCCTACTCGTCGTTCAAAAAAGTTTGTCT 41861 Query 36925 TTCCTTCTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATA----TA 36980 ||||| | | ||||| ||||| |||||||| |||||| || ||| || | | Sbjct 41860 TTCCTCCAATACTAATATTATCCATGAAATCAAAGGGATTATCTGAATTGTAAACTTTTT 41801 Query 36981 GTACTACATGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATT 37040 || | || ||| || | || ||| ||| |||||||||| || |||| ||||||| Sbjct 41800 GTTGTCCAAGAT--TT--TGCAAAAGGTAATCACCAACAAATTCAATATATTGACACATT 41745 Query 37041 AGTTCATAGTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCT 37100 | |||| ||| || || |||||| | || || | || || | |||| || ||| Sbjct 41744 AAATCATGGTTCATGCCGATTAGTCTAACGGGCAAAGCGTCAGTTAAAAATTCTTGTTCA 41685 Query 37101 ATTATTACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAA 37160 ||| ||||| || ||| |||| | || |||| | | || | |||||| Sbjct 41684 ATTGCAACAGCTTCAGTAATTATACGTGTTACAAGTTCTGCCATAGGTTTAACCTTTAAA 41625 Query 37161 TATTTAAACAATAAACATGCAAAATCACAATG------------------TAAAC----- 37197 | | | ||| ||||| ||||| |||||||| ||||| Sbjct 41624 TGATCATACATCAAACAAGCAAAGTCACAATGCAACCCCTGAAAGATATATAAACTAAGA 41565 Query 37198 -----------CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAA 37246 | ||||||| ||| || | ||| || ||| || | |||| ||||| Sbjct 41564 AATAATGAATACCTCATCTCGACTGATGAGTTCGTTGCTAAAAGTGAGTCCTTTCATTAG 41505 Query 37247 ACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAAC 37306 || || |||||| | |||||| || | || || || || ||||||||||| ||||| || Sbjct 41504 ACATCGTTTTTTCAACCAAAAAATGGAAGCGAATGAACCTGAAAAGAAAATTCCTTCTAC 41445 Query 37307 TGCTGCAAATGCTACAAGACGTGTACCGAAAGT-TGAACTATAATCAGAAATCCAttttt 37365 || ||||||||||||| | || || ||| || ||| | ||| ||||||||| Sbjct 41444 AGCAGCAAATGCTACAACTC---TAT-GAGAGTATGGACTGTCATCCCCAATCCATTTCA 41389 Query 37366 ttGTCCAATCTGCCTTTAATTTAA--CA---CAT----TCAATTG--------------- 37401 || ||||| ||||||| | | || ||| || |||| Sbjct 41388 ATGCCCAATTTGCCTTTTTTCGTATGCAGGGCATCGTATCGATTGCATTGAACAAACGAT 41329 Query 37402 -----TTTCAATTGC----TTTTA-AG-AGAAAGtttt-----tttCTTCACTATCTGTT 37445 ||| |||||| || || || ||||| ||| |||| ||| | ||| || Sbjct 41328 TCCTATTTAAATTGCAAAATTATACAGTAGAAATATTTATACTTTTCATCATTTTCTTTT 41269 Query 37446 ATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGA 37505 || ||||| ||||| || ||||| |||||||| ||||||||||||||||| ||| ||| Sbjct 41268 ATGTAAGTGTCAATCAGCAAACTGTACATTTCCGAGTGAATATTTTCAATCATTATTTGA 41209 Query 37506 AAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGT---TAAA------------- 37549 |||| |||||||| | |||||| ||| || |||||||| |||| Sbjct 41208 AAACTGTAAAAACAACGAGCTTCTAATACTTTAACATCGTTTATAAACCTTTCTGCCTAA 41149 Query 37550 ----------------------AAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCAC 37587 ||| || || | ||||||||||| || || ||||| | Sbjct 41148 TTTTAATTATTTTTTCATTTTTAAAACTATTTACCAAGTTTTCATTCACGATGCCATCGC 41089 Query 37588 TAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTT---TCATCATTTGATAATT 37644 | |||||||| ||||| | ||| | ||| |||||||| ||| || |||||| || | Sbjct 41088 TTGCTGCAAAAAAAGCCAAAACGTGTTTAATAAAATGCCTTTCGTCGTCATTTAATTTAT 41029 Query 37645 TTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCA 37704 ||||||||| || || | |||||||||||||||| ||||||||| || | Sbjct 41028 CGTTCCAATCAGAAACGTCATGGCTTAAATCAACTTCATCAGTTGTCCAAAAAGAGGCTA 40969 Query 37705 ATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTAC 37756 ||| ||| ||||| |||||| ||||| | || || ||||| || || Sbjct 40968 CTGCCTTTTTGTACATTTTCCAAAGATCATCGTATTTAATGGGAAACATGAC 40917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592290738060800