Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2377 165 6e-36 seq1640 109 4e-19 >seq2377 Length=22370 Score = 165 bits (182), Expect = 6e-36 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| || | | |||||||| | ||||||||||| || ||||| ||||| Sbjct 338 TTCCACCTCTCAATCTCAGTACTAAATGCAAAGTAGATTCTTTCTGAATATTATAATCAC 279 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||||| |||| |||||||| ||||| ||||| || ||||| ||||| || || | Sbjct 278 TCAAACTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATTAAACGTTGTTGGTCTGGAG 219 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| ||||||||||||||| ||||||| |||| | || || | ||| | Sbjct 218 GAATCCCTTCCTTATCTTGAATTTTTGCTTTTACATTTTCAATTGTATCGCTAGGTTCAA 159 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||||| || | ||||| ||||| | ||||| ||||| || ||||| Sbjct 158 CTTCAAGGGTAATGGTTTTTCCGGTAAGTGTTTTAACAAAAATTTGCAT 110 >seq1640 Length=44113 Score = 109 bits (120), Expect = 4e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 101335 AAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTAC 101394 ||| || ||||| |||||||| || ||||| || ||||||||||||||||| || || Sbjct 44113 AAAAATTAAACGTTGTTGATCTGGAGGAATTCCCTCTTTATCTTGAATTTTCGCCTTAAC 44054 Query 101395 AATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTT 101454 | |||| | ||| ||| | || ||||||||||| | || || || ||||||||||| Sbjct 44053 ATTTTCAATAGTATCACTAGGCTCAACTTCAAGAGTAATAGTCTTTCCAGTTAAAGTTTT 43994 Query 101455 TACAAATATCTGCAT 101469 |||||||| ||||| Sbjct 43993 AACAAATATTTGCAT 43979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396261399656640