Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq2489 129 3e-25 >seq2489 Length=37580 Score = 129 bits (142), Expect = 3e-25 Identities = 280/406 (69%), Gaps = 20/406 (5%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATG-CCAATCAGCATTTTGCTCAACTT-TCTCCATAAATAAATCT 25945 ||||||||| ||||| || ||||| ||| || || || |||| ||||| ||||| Sbjct 23340 ATTTGGACA-AATAAGTGTCCAATTTTCATCTTTTTCTACACGTCTC-ATAAACAAATCA 23283 Query 25946 GGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTT 26005 || ||||||| |||||| ||||||||||||| | | |||| | || ||| | Sbjct 23282 GGTATCCACAATGCATAGAATAAATCTCTCGTTTTGGTTTCATTAGAACCAATATTAGTG 23223 Query 26006 TTTAGATCTAAGAAA-TCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACT 26064 | || ||||||| ||||||||||| | ||||| ||||||||||| || || | Sbjct 23222 CGCA-ATGTAAGAAAATCAAAAATATCAGCATGCCAAGGTTCTAAATAAATGGCGATTGC 23164 Query 26065 ACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAA 26124 || |||||| |||||||| ||||| |||| || || | | |||||| || Sbjct 23163 TCCGGGTCTTTTGTTACCACCTTGGTCTACATATCGAGCTGTGGCGTCAAAAACTCGTAA 23104 Query 26125 CATTGGAACTAATCCAGTTGAAAATCCGTTTGTGC----TATGAATCTTGGATCCTGTCG 26180 ||| ||||| | |||| |||| ||| || || | ||| | || | ||| | | Sbjct 23103 CATAGGAACAATTCCATTTGATGTTCCATTCGTTCCTTTTATATAACT---ACCCT-TGG 23048 Query 26181 ATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAAT---AGCTGCAC 26237 ||| |||| || || || |||||||||||||| | || ||||| ||| ||| Sbjct 23047 ATCGAATACAATGTATATTAACTCCGATTCCACCAGCACTCTTGGAAATTAGAGC-GCAT 22989 Query 26238 AATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 ||| || ||||||| ||||||||| ||||| ||| | ||||| Sbjct 22988 TGTCTTAA--TGTATCGTAAATTCCTTCAATGCTGTCATCCTTCAT 22945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253029144584000