Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1444 334 1e-86 seq1980 181 1e-40 seq2377 145 1e-29 seq780 125 9e-24 seq1640 91.5 2e-13 seq1811 89.7 7e-13 >seq1444 Length=49888 Score = 334 bits (370), Expect = 1e-86 Identities = 720/1060 (68%), Gaps = 20/1060 (2%) Strand=Plus/Minus Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769 ||||| || || || || || || |||| |||| ||| |||| || ||||| || || Sbjct 46485 GCAGTGGTCACAGTTCCAGCCTATTTCAATGATGGTCAAAGACAAGCTACAAAAGATGCA 46426 Query 195770 GCTGCTATTGCGGGTCTAAACTGTCTT-AGAATTATCAATGAACCAACAGCGGCTGCAAT 195828 ||||||||| ||| | || ||| || || ||| | || |||||||| || ||||| | Sbjct 46425 TGTGCTATTGCTGGTATTAA-TGTTTTGAGGATTTTGAACGAACCAACGGCTGCTGCTCT 46367 Query 195829 TGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGG 195888 || ||||| ||||||| | |||||||||| | | || || || ||||| | || Sbjct 46366 AGCGTATGGGTTGGACAAAATTGGCGACGAAGATAGACACGTTTTAATTTTTGACATGGG 46307 Query 195889 TGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGC 195948 ||||| || |||||||| || || | | ||||| || ||| ||| |||||||| | Sbjct 46306 AGGTGGCACATTTGATGTTTCTATTTTGACTATTGTCGGAGGTGTATATGAAGTAAAATC 46247 Query 195949 TACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTT 196008 || ||||| || |||||| | || |||||||| | || | | | | | || | Sbjct 46246 AACGGCTGGAGACACTCATTTGGGAGGTGAAGACATTGACGAGAGATTAGTGCAGCACTG 46187 Query 196009 -GTCTGATGAGTTCCGTCGAAAGAAT---AAGAAAGATATTTCTGGAAATCCTAGGGCTC 196064 ||| | || || || |||||| |||||||||||| |||||||| || ||| Sbjct 46186 CGTCCAA-GATTT---TCAAAAGAAACACAAGAAAGATATTACTGGAAATAGAAGAGCTA 46131 Query 196065 TTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAA 196124 | ||||| | | |||| ||| |||||||||||||||| | | || ||| | |||| Sbjct 46130 TGCGTCGTTTGAAAACTGAATGCGAACGTGCCAAACGAAATTTATCCTCTGAATCGCAAA 46071 Query 196125 CAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTG 196184 | || | | || || || ||||||| || || |||| | || || || || | | Sbjct 46070 CTATAATCAACATAGACTCAGTGTTTGATGGTATCGACTATCAGACTACCATGACTCAAG 46011 Query 196185 CACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAG 196244 | | || ||||| ||| | |||| | || | | | || || || || ||| Sbjct 46010 CTAGATTGGAAGATTTATGCAATGATATATTCACCAGCACACTCGACCCGGTCGACAAAG 45951 Query 196245 TACTTCGTGACGCAAAGATGGATAA--GTCTAAGGTTGATGAAATTGTCCTTGTGGGAGG 196302 | | ||||| || | ||||| ||| || | | || ||||| ||||| || || Sbjct 45950 CATTGCGTGATTCAGGATTTGATAAAAGTCAAA--TACACGATATTGTTCTTGTTGGTGG 45893 Query 196303 ATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTT 196362 || || || ||||| || |||||| ||||||||| ||||| ||| |||| | || Sbjct 45892 TTCTACTCGAATTCCAAAAATTCAAAGTTTGCTTTCTAAATTCTTTAATGGTAAAAAATT 45833 Query 196363 AAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTAT 196422 ||| | | || || || || ||||| || || ||||||||||| ||||| ||||| || Sbjct 45832 AAATCATAGCATTAATCCAGACGAAGCCGTCGCGTATGGTGCGGCAGTTCAAGCTGCGAT 45773 Query 196423 TCTCTCAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGT 196482 | | | || | | | | | | || || |||||| | || ||||||| || || || | Sbjct 45772 TATGGCTGGCGATCAAAGTGAAAAAGTTCAAGATTTATTGTTACTTGACGTAGCTCCTTT 45713 Query 196483 ATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAAC 196542 ||| |||| || ||| | || ||| ||||||||||||||||| | || || || Sbjct 45712 ATCGATGGGCATTACAACTTCAGGCTCTGTAATGACTAAAATTATTGAACGTAATACCAC 45653 Query 196543 TATTCCGACTAAGAAGGAACAAGTCTTTT-CAACGTATTCCGATAATCAACCAGGTGTTC 196601 |||||| || || ||| || ||| ||| | ||||| ||||||| ||||| | ||| Sbjct 45652 TATTCCCACCAAAAAGATGCA-GTCGTTTACGACGTACGCCGATAACCAACCTGCAGTTT 45594 Query 196602 ATATTCAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACT 196660 ||| || | |||||||||||| | || || |||| || || ||| || | |||| Sbjct 45593 CAATTGAAATTTATGAAGGAGAAAG-GCCGTTGTCAAAAGACAATCATTTATTAGGAAAA 45535 Query 196661 TTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTA-ATGTTTGCTT 196719 || ||||| || || || || | | || ||||| | || || | || | || || Sbjct 45534 TTTGATTTAACTGGTATCCCTCCGGGTCCAAGAGGCGGACC-CAAAGTAGAAGTCACATT 45476 Query 196720 CGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAG 196759 ||||| ||||| ||||| ||| | || || || || ||| Sbjct 45475 TGATATGGACGCTAATGGTATTTTGAAGGTTACGGCAGAG 45436 >seq1980 Length=651 Score = 181 bits (200), Expect = 1e-40 Identities = 333/483 (69%), Gaps = 4/483 (1%) Strand=Plus/Minus Query 196278 TTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTT 196337 || |||| |||| | || || ||||| || | || || || |||||| | || | | Sbjct 604 TTCATGATGTTGTTTTGGTTGGTGGATCTACTAGAATCCCTAAAATTCAAAAATTGTTGT 545 Query 196338 CTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTT 196397 | ||||| ||| |||| | || || | | ||||| || |||||||| || |||| Sbjct 544 CAGATTTCTTTAATGGTAAAAAATTGAATCACAGCATCAATCCTGATGAAGCTGTAGCTT 485 Query 196398 ATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACGTCCAAGATC 196457 ||||||| || ||||| || || ||| | |||| | | | | || || ||||||| Sbjct 484 ATGGTGCCGCTGTTCAAGCCGCAATTATGAGTGGTGACCAAAGTGAAAAGGTTCAAGATC 425 Query 196458 TTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGA 196517 | | | | |||||| |||| |||| |||| | ||||| |||| ||| ||| Sbjct 424 TATTATTGTTGGATGTTACACCTCTATCTTTGGGAATCTGCACAGCTGGTGATGTCATGT 365 Query 196518 CTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGT 196577 |||||||| | || || || || ||||| || || || ||||| | || ||||||| Sbjct 364 CTAAAATTGTAGAAAGAAATTGTACAATTCCTACAAAAAAACAACAAATATTCTCAACGT 305 Query 196578 ATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTG-CA 196636 || | ||||||||| | | ||| ||||||| | || ||||||||||| || || | Sbjct 304 ATGCAGATAATCAAACTGCAGTTACTATTCAAATTTACGAAGGAGAACG-ACCAATGACT 246 Query 196637 AAGGATAACCATCTACTTGGAAC-TTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGG 196695 || || || || || |||| | ||| || || || || || ||| ||||||| |||| Sbjct 245 AAAGACAATCA-CTTGTTGGGTCGTTTTGACTTAACCGGAATACCACCTGCACCACGAGG 187 Query 196696 TGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGC 196755 |||||| || ||| | ||| ||| ||||| || || || || ||| | || | || || Sbjct 186 TGTTCCTCAAATTGAAGTTACCTTTGATATTGATGCTAACGGTATTATGAAAATTACTGC 127 Query 196756 TGA 196758 ||| Sbjct 126 TGA 124 >seq2377 Length=22370 Score = 145 bits (160), Expect = 1e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || |||||||||| ||||| ||||| ||||| |||||||| || ||||| || ||||| Sbjct 105 GTGGTATGCAAATTTTTGTTAAAACACTTACCGGAAAAACCATTACCCTTGAAGTTGAAC 164 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| || || | ||||| || ||||||||||||||||| ||||| || | Sbjct 165 CTAGCGATACAATTGAAAATGTAAAAGCAAAAATTCAAGATAAGGAAGGGATTCCTCCAG 224 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | || ||||| | ||||||||||||||||| | |||||||| | | | ||||| Sbjct 225 ACCAACAACGTTTAATTTTTGCTGGTAAACAATTGGAAGATGGCAGAAGTTTGAGTGATT 284 Query 172037 ACAACGTTCAAAAGGAGTCTACT 172059 | || |||| || || |||||| Sbjct 285 ATAATATTCAGAAAGAATCTACT 307 >seq780 Length=27146 Score = 125 bits (138), Expect = 9e-24 Identities = 265/393 (67%), Gaps = 2/393 (1%) Strand=Plus/Plus Query 181869 CCAGTTCCAATACCCTCACTTCCATTGACCAAGATCATGGGTATAGTAGGCATATAGAAC 181928 |||||||||||||| |||| ||||| ||||| |||||||||| | | || | |||| | Sbjct 13464 CCAGTTCCAATACCTTCACAACCATTAACCAAAATCATGGGTAAAATGGGGACATAGTAT 13523 Query 181929 TCTGGTTCAATAGAGCGACCATCATCATCCAAATAATTAAGAATAGCATCATCCTTGGGA 181988 | ||||| | | ||| |||| | |||| |||||||| |||||| | || Sbjct 13524 TTGGGTTCTGTTTTAAAAGTATCGTCATACGTATAACTAAGAATACTATCATCTTCAGGT 13583 Query 181989 TCAAAAATTTTACGAGCCTCGGATGTCAGTCGTGTGAAGATATATC-TCGTCTGGCTAGC 182047 |||||||||||||| || | || | ||||| ||||||| | || ||| || Sbjct 13584 CTAAAAATTTTACGAGTAATGGCATTGAGACAAGTGAAAATATATCGAGGACTAGCT-GC 13642 Query 182048 ATCCTTACCACCCAAAAGCCGTGTTCCAAATTGACCACATGGTTCGAGAAGATTGATATT 182107 ||| || || || | || || |||||||||||| ||| | ||||| ||||| Sbjct 13643 ATCTTTTCCTCCAGCTAATCGAGTACCAAATTGACCATTTGGCATTAATAGATTAATATT 13702 Query 182108 GTTAGATCCTGTGTAATCATTCGCCAATTTCACAATTGTATCAGCGAGGGATACTTCACC 182167 ||| || | |||||| ||||| || | |||||| | | |||||| || Sbjct 13703 ATTACTGCCAACGAAATCATGAGCCAAATTTATAATTGTGGCCATCAAACTTACTTCGCC 13762 Query 182168 GTGATGATAGGCAGACTTTTCAGCCACAAAGGCGGCAAGTTGAGCAACTTTCATTTCGTT 182227 ||||||||| || || |||||| ||| | | | | ||| |||||||| | ||| || Sbjct 13763 GTGATGATATGCCGATAATTCAGCAACAGAACCAGATAATTGTGCAACTTTTAATTCTTT 13822 Query 182228 GCGAAGATTTTTCTGGAAACATGAATACATTAC 182260 | |||| | | |||||| | ||||| || Sbjct 13823 TATCAAATTTCTTTTGAAACAAGTGTACATAAC 13855 >seq1640 Length=44113 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| ||||| | |||||||| ||||| || || || |||||| | Sbjct 43979 ATGCAAATATTTGTTAAAACTTTAACTGGAAAGACTATTACTCTTGAAGTTGAGCCTAGT 44038 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | || || || ||||||||||| || || ||||| || ||||| Sbjct 44039 GATACTATTGAAAATGTTAAGGCGAAAATTCAAGATAAAGAGGGAATTCCTCCAGATCAA 44098 Query 171982 CAACGACTTATTTTT 171996 ||||| | |||||| Sbjct 44099 CAACGTTTAATTTTT 44113 >seq1811 Length=36824 Score = 89.7 bits (98), Expect = 7e-13 Identities = 126/174 (72%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 195815 ACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTG 195874 || || || || ||||||||||| ||||||| ||| |||||| ||||| || ||| Sbjct 9051 ACCGCTGCCGCCATTGCTTATGGATTGGACAA-AAC--TGACGAA---AAAAACGTTTTG 8998 Query 195875 ATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATA 195934 | | ||| | || |||||||| ||||| || | | || | ||||| ||| || Sbjct 8997 GTTTACGATTTGGGAGGTGGTACATTTGACGTTACTTTGCTTACCATTGACAATGGAGTA 8938 Query 195935 TTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGAT 195988 || |||||| ||| || ||| ||||||||| ||||||| |||||||| ||| Sbjct 8937 TTTGAAGTATTGGCAACCAATGGAGATACTCATTTAGGTGGAGAAGATTTTGAT 8884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657833454054400