Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq2377 172 1e-37 seq1640 134 2e-26 seq1952 96.9 6e-15 >seq2377 Length=22370 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||||| ||||| | |||||| |||| ||||| ||||||||| || Sbjct 339 ATTCCACCTCTCAATCTCAGTACTAAATGCAAAGTAGATTCTTTCTGAATATTATAATCA 280 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || |||| ||| || |||||||| || ||||||||||| | ||||| || ||| Sbjct 279 CTCAAACTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATTAAACGTTGTTGGTCTGGA 220 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| |||||||| ||||| | ||||| |||| ||| |||||| || ||| Sbjct 219 GGAATCCCTTCCTTATCTTGAATTTTTGCTTTTACATTTTCAATTGTATCGCTAGGTTCA 160 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || ||||| || || || ||||| ||||| |||||||| Sbjct 159 ACTTCAAGGGTAATGGTTTTTCCGGTAAGTGTTTTAACAAAAATTTGCAT 110 >seq1640 Length=44113 Score = 134 bits (148), Expect = 2e-26 Identities = 132/170 (78%), Gaps = 8/170 (5%) Strand=Plus/Minus Query 193226 AAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTAT 193285 ||||||||| | |||||||| ||||| ||||| ||||||||||| ||||| | || | Sbjct 44113 AAAAATTAAACGTTGTTGATCTGGAGGAATTCCCTCTTTATCTTGAATTTTCGCCTTAAC 44054 Query 193286 ATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTT 193345 |||| ||||||||| || ||||||||| ||||| ||||| || || |||| ||||| Sbjct 44053 ATTTTCAATAGTATCACTAGGCTCAACTTCAAGAGTAATAGTCTTTCCAGTTAAAGTTTT 43994 Query 193346 TACAAATATTTGCATTTTATTAGTAAAAT----AATTATTTTAAATAATA 193391 ||||||||||||||||| |||||| ||||| ||||||| || Sbjct 43993 AACAAATATTTGCATTTT----CTAAAATTTACAATTAAATTAAATATTA 43948 >seq1952 Length=33364 Score = 96.9 bits (106), Expect = 6e-15 Identities = 90/113 (80%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || ||||||||||| |||||||| | ||| | |||| ||| ||||| || | |||||| Sbjct 32348 ATACCTTCTTTATCCTGTATTTTCGCTTTAACATTTTCAATGGTATCCGACGGTTCAACT 32407 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT-TTTAT 193365 || | ||| |||||||| || |||| ||||| ||||| |||||||| ||||| Sbjct 32408 TCCAAAGTAATAGTTTTTCCCGTTAAGGTTTTAACAAAAATTTGCATGTTTAT 32460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899614815206400