Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2377 140 5e-28 seq1640 111 2e-19 seq2628 107 3e-18 seq1952 93.3 6e-14 >seq2377 Length=22370 Score = 140 bits (154), Expect = 5e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||||||| | || |||||||| ||||| | ||||| ||| | Sbjct 110 ATGCAAATTTTTGTTAAAACACTTACCGGAAAAACCATTACCCTTGAAGTTGAACCTAGC 169 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| ||||| |||||||| ||||| || |||||||| ||| Sbjct 170 GATACAATTGAAAATGTAAAAGCAAAAATTCAAGATAAGGAAGGGATTCCTCCAGACCAA 229 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || |||| ||| ||||| || | |||||| ||||| ||| ||||||||| Sbjct 230 CAACGTTTAATTTTTGCTGGTAAACAATTGGAAGATGGCAGAAGTTTGAGTGATTATAAT 289 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| | || | |||||||| | ||||| ||||| || Sbjct 290 ATTCAGAAAGAATCTACTTTGCATTTAGTACTGAGATTGAGAGGTGG 336 >seq1640 Length=44113 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||||||| ||||||| || |||||||| |||||||| | ||||| || | Sbjct 43976 AAAATGCAAATATTTGTTAAAACTTTAACTGGAAAGACTATTACTCTTGAAGTTGAGCCT 44035 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| |||| ||| || || ||||| ||||||||||| || || |||||||| Sbjct 44036 AGTGATACTATTGAAAATGTTAAGGCGAAAATTCAAGATAAAGAGGGAATTCCTCCAGAT 44095 Query 155940 CAACAAAGATTGATTT 155955 |||||| | || |||| Sbjct 44096 CAACAACGTTTAATTT 44111 >seq2628 Length=67642 Score = 107 bits (118), Expect = 3e-18 Identities = 170/243 (70%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 18532 AAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAAC 18591 ||| || | |||||| || ||||| || || || || | ||| ||||| |||||||| Sbjct 41126 AAAACTATTTACCAAGTTTTCATTCACGATGCCATCGCTTGCTGCAAAAAAAGCCAAAAC 41067 Query 18592 ATATTTAATGAAATGTTTTTCATTATCCTTGAGATT---GTTCCATTCATCTATATCTTT 18648 | |||||| ||||| |||| | || || | || |||||| ||| | || | Sbjct 41066 GTGTTTAATAAAATGCCTTTCGTCGTCATTTAATTTATCGTTCCAATCAGAAACGTCATG 41007 Query 18649 TGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTTTATA 18708 || ||||||||| || | |||||||||||| | | | |||| |||||||||||| | Sbjct 41006 GCTTAAATCAACTTCATCAGTTGTCCAAAAAGAGGCTACTGCCTTTTTGTACATTTTCCA 40947 Query 18709 AATATCTTCATGTTGTATAGGAAATAATATATATCGTTTATAATTTTTTATTAACATAGG 18768 || ||| || | || || ||||| | | |||||||| | | || ||||||| || Sbjct 40946 AAGATCATCGTATTTAATGGGAAACATGACGTATCGTTTTTCTTCTTCATTTAACATGGG 40887 Query 18769 TTC 18771 ||| Sbjct 40886 TTC 40884 >seq1952 Length=33364 Score = 93.3 bits (102), Expect = 6e-14 Identities = 89/113 (79%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 155818 ATAAA-ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 ||||| |||||||| ||| ||||||| || || |||||||||||||| || ||||| ||| Sbjct 32460 ATAAACATGCAAATTTTTGTTAAAACCTTAACGGGAAAAACTATTACTTTGGAAGTTGAA 32401 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCAT 155929 || |||| ||| ||| || ||| |||||||| ||||||||||| || Sbjct 32400 CCGTCGGATACCATTGAAAATGTTAAAGCGAAAATACAGGATAAAGAAGGTAT 32348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731839797632000