Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2377 154 3e-32 seq1640 100 6e-16 seq2628 93.3 8e-14 seq1952 93.3 8e-14 >seq2377 Length=22370 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | | | ||||||||| ||||||| ||||| |||||||||||| Sbjct 339 ATTCCACCTCTCAATCTCAGTACTAAATGCAAAGTAGATTCTTTCTGAATATTATAATCA 280 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||| |||| |||||||||||||||||||| ||||| | ||||| || || Sbjct 279 CTCAAACTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATTAAACGTTGTTGGTCTGGA 220 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| ||||| ||||||||| || | ||| | ||| Sbjct 219 GGAATCCCTTCCTTATCTTGAATTTTTGCTTTTACATTTTCAATTGTATCGCTAGGTTCA 160 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || ||||||||||| || || | |||||||| ||| || ||||| Sbjct 159 ACTTCAAGGGTAATGGTTTTTCCGGTAAGTGTTTTAACAAAAATTTGCAT 110 >seq1640 Length=44113 Score = 100 bits (110), Expect = 6e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 192402 AAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTAC 192461 ||| ||||| | |||||||| || || ||||| ||||||||||| ||||| || || Sbjct 44113 AAAAATTAAACGTTGTTGATCTGGAGGAATTCCCTCTTTATCTTGAATTTTCGCCTTAAC 44054 Query 192462 ATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 192521 ||| |||| ||| | || ||||| |||||||| || || |||||||| ||||| Sbjct 44053 ATTTTCAATAGTATCACTAGGCTCAACTTCAAGAGTAATAGTCTTTCCAGTTAAAGTTTT 43994 Query 192522 AATAAATATCTGCATTTT 192539 || |||||| |||||||| Sbjct 43993 AACAAATATTTGCATTTT 43976 >seq2628 Length=67642 Score = 93.3 bits (102), Expect = 8e-14 Identities = 141/197 (72%), Gaps = 9/197 (5%) Strand=Plus/Minus Query 50223 ACAATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTA 50282 || || ||||| |||||| || || || ||||||| |||||||||||| |||| | Sbjct 41101 ACGATGCCATCGCTTGCTGCAAAAAAAGCCAAAACGTGTTTAATAAAATGCCTTTCGTCG 41042 Query 50283 TCTTTTAAATTTTC---CCAAGATTCAAGATCGT-TTG--ATAAATCTACTTCTTCTATT 50336 || ||||| || || |||| ||| | ||| || |||||| ||||| || || Sbjct 41041 TCATTTAATTTATCGTTCCAA---TCAGAAACGTCATGGCTTAAATCAACTTCATCAGTT 40985 Query 50337 GTCCAAAATGATGCTACGGATTTTTTATACATTTGATATATATCAAAATGTTCAATGGGA 50396 |||||||| || ||||| | ||||| ||||||| | | |||| | || ||||||| Sbjct 40984 GTCCAAAAAGAGGCTACTGCCTTTTTGTACATTTTCCAAAGATCATCGTATTTAATGGGA 40925 Query 50397 AATAGTACATATCGTTT 50413 || | || |||||||| Sbjct 40924 AACATGACGTATCGTTT 40908 >seq1952 Length=33364 Score = 93.3 bits (102), Expect = 8e-14 Identities = 149/223 (67%), Gaps = 36/223 (16%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| |||||| || ||| |||| |||||||||||||||||||| || |||||| Sbjct 32238 ATATTGTAATCACTTAGACTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTC 32297 Query 192415 TGTTGATCAGGTGGTATTCCT-----------------------------------TCTT 192439 |||||||| || ||||| ||| |||| Sbjct 32298 TGTTGATCCGGAGGTATACCTATATAACATTAATCAGGATAATATTATACATACCTTCTT 32357 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 |||| |||||||| ||| ||||| || | ||| |||| ||| ||||| | ||||| Sbjct 32358 TATCCTGTATTTTCGCTTTAACATTTTCAATGGTATCCGACGGTTCAACTTCCAAAGTAA 32417 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT-TTTAT 192541 | ||||| || ||||| ||||||| ||| || ||||| ||||| Sbjct 32418 TAGTTTTTCCCGTTAAGGTTTTAACAAAAATTTGCATGTTTAT 32460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984435599952000