Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2377 163 5e-35 seq1640 100 5e-16 seq2628 96.9 6e-15 seq1952 91.5 3e-13 >seq2377 Length=22370 Score = 163 bits (180), Expect = 5e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | || | ||||||||| ||||||| ||||| |||||||||||| Sbjct 339 ATTCCACCTCTCAATCTCAGTACTAAATGCAAAGTAGATTCTTTCTGAATATTATAATCA 280 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||| || | || |||||||||||||||||||||||||| | |||||||| || Sbjct 279 CTCAAACTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATTAAACGTTGTTGGTCTGGA 220 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| ||||| ||||||||| || ||||| | ||| Sbjct 219 GGAATCCCTTCCTTATCTTGAATTTTTGCTTTTACATTTTCAATTGTATCGCTAGGTTCA 160 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || ||||||||||| || || | |||||||| || || ||||| Sbjct 159 ACTTCAAGGGTAATGGTTTTTCCGGTAAGTGTTTTAACAAAAATTTGCAT 110 >seq1640 Length=44113 Score = 100 bits (110), Expect = 5e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 171935 AAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTAC 171994 ||||||||| | ||||| || || || ||||| ||||||||||| ||||| || || Sbjct 44113 AAAAATTAAACGTTGTTGATCTGGAGGAATTCCCTCTTTATCTTGAATTTTCGCCTTAAC 44054 Query 171995 ATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 172054 ||| |||||||| | || ||||| |||||||| || || |||||||| ||||| Sbjct 44053 ATTTTCAATAGTATCACTAGGCTCAACTTCAAGAGTAATAGTCTTTCCAGTTAAAGTTTT 43994 Query 172055 AATGAATATCTGCATTTT 172072 || ||||| |||||||| Sbjct 43993 AACAAATATTTGCATTTT 43976 >seq2628 Length=67642 Score = 96.9 bits (106), Expect = 6e-15 Identities = 170/243 (70%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 39525 ACAATACCATCAGATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTA 39584 || || ||||| |||||| || || || ||||| | |||||||||||| |||| | Sbjct 41101 ACGATGCCATCGCTTGCTGCAAAAAAAGCCAAAACGTGTTTAATAAAATGCCTTTCGTCG 41042 Query 39585 TCTTTTAAATTTTC---CCAAGATTCAAGATCGTT-TGA--TAAATCTACTTCTTCTATT 39638 || ||||| || || |||| ||| | ||| || |||||| ||||| || || Sbjct 41041 TCATTTAATTTATCGTTCCAA---TCAGAAACGTCATGGCTTAAATCAACTTCATCAGTT 40985 Query 39639 GTCCAAAAAGATGCTACGGATTTTTTATACATTTGATATATATCAAAATGTTCAATGGGA 39698 ||||||||||| ||||| | ||||| ||||||| | | |||| | || ||||||| Sbjct 40984 GTCCAAAAAGAGGCTACTGCCTTTTTGTACATTTTCCAAAGATCATCGTATTTAATGGGA 40925 Query 39699 AATAACACATATCGTTTAGTAtttttttCTAATATCGGTTCTCGTA--TGCTTTCTAAAT 39756 || | || |||||||| | || | ||| || ||||| || ||| || ||||| Sbjct 40924 AACATGACGTATCGTTTTTCTTCTTCATTTAACATGGGTTCGAATATCTGCATTATAAAT 40865 Query 39757 TAT 39759 ||| Sbjct 40864 TAT 40862 Score = 95.1 bits (104), Expect = 2e-14 Identities = 170/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 38830 ATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTC--TAATGATAT 38887 |||| |||||||| ||| | ||| ||||||||||| |||||| | || | |||| Sbjct 41902 ATTTCTGGTATTCTCCTACTCGTCGTTCAAAAAAGTTTGTCTTTCCTCCAATACTAATAT 41843 Query 38888 TAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATA 38947 | || ||| |||||||| ||||| | | ||| ||| ||||| | | ||| | | Sbjct 41842 T--ATCCATGAAATCAAAGGGATTATCTGAATTGTAAACTTTTTGTTGT-CCAAGATTTT 41786 Query 38948 TAATAATCT-ATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCA 39006 | || | ||| | |||||||||| |||||| ||||||| ||| ||||| || | Sbjct 41785 GCAAAAGGTAATCACCAACAAATTCAATATATTGACACATTAAATCATGGTTCATGCCGA 41726 Query 39007 ATAATTTAAATGGTAATGCATCATCAATAAATTCTTTTTCTATTTCTACAGCTTGTTTAA 39066 || | ||| || || || ||| | |||||||| ||| ||| | ||||||| ||| Sbjct 41725 TTAGTCTAACGGGCAAAGCGTCAGTTAAAAATTCTTGTTCAATTGCAACAGCTTCAGTAA 41666 Query 39067 TTAT 39070 |||| Sbjct 41665 TTAT 41662 >seq1952 Length=33364 Score = 91.5 bits (100), Expect = 3e-13 Identities = 92/119 (77%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||||||||| |||||||| ||| ||||| || ||||| |||| ||| ||| Sbjct 32348 ATACCTTCTTTATCCTGTATTTTCGCTTTAACATTTTCAATGGTATCCGACGGTTCAACT 32407 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTATAAAA 172081 || | |||||| ||||| || ||||| ||||||| || || ||||| | |||||||| Sbjct 32408 TCCAAAGTAATAGTTTTTCCCGTTAAGGTTTTAACAAAAATTTGCATGT--TTATAAAA 32464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905096174016000