Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq565 95.1 4e-14 seq780 86.0 2e-11 seq2337 84.2 6e-11 >seq565 Length=32683 Score = 95.1 bits (104), Expect = 4e-14 Identities = 74/87 (85%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 409099 TTTTATGCCTCCATAGCTCAGTTGGTCAGAGCGTGCGGCTGTTAACCGCGAGGTCACCGG 409158 |||| ||||||| ||||||||| ||| ||||||| ||||||||||||| ||||| ||| Sbjct 4457 TTTTGTGCCTCCTTAGCTCAGT-GGTTAGAGCGTTCGGCTGTTAACCGAAAGGTCGTCGG 4399 Query 409159 TTCGAAACCGGTTGGAGGCGttttttt 409185 ||||| |||| | || ||||||||||| Sbjct 4398 TTCGACACCGATAGGGGGCGTTTTTTT 4372 Score = 89.7 bits (98), Expect = 2e-12 Identities = 69/81 (85%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 409291 TTTGTGCCTCCATAGCTCAGTTGGTCAGAGCGTGCGGCTGTTAACCGCGAGGTCACCGGT 409350 ||||||||||| ||||||||| ||| ||||||| ||||||||||||| ||||| |||| Sbjct 4456 TTTGTGCCTCCTTAGCTCAGT-GGTTAGAGCGTTCGGCTGTTAACCGAAAGGTCGTCGGT 4398 Query 409351 TCGAAACCGGTTGGAGGCGTT 409371 |||| |||| | || |||||| Sbjct 4397 TCGACACCGATAGGGGGCGTT 4377 >seq780 Length=27146 Score = 86.0 bits (94), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 60143 GTGAAAATATACCTCTCGGAT--GCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATT 60200 ||||||||||| || ||| ||||| || || || || | || || ||||||| Sbjct 13617 GTGAAAATATA--TCGAGGACTAGCTGCATCTTTTCCTCCAGCTAATCGAGTACCAAATT 13674 Query 60201 GTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAA 60260 | || |||||| ||||||||||| || ||| ||| ||||||| ||||| | | | Sbjct 13675 GACCATTTGGCATTAATAGATTAATATTATTACTGCCAACGAAATCATGAGCCAAATTTA 13734 Query 60261 CAATAGCACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACATATC 60320 ||| | | | ||||| |||| |||||||||||| | || ||| | |||| | | Sbjct 13735 TAATTGTGGCCATCAAACTTACTTCGCCGTGATGATATGCCGATAATTCAGCAACAGAAC 13794 Query 60321 CACTGAATTGTGCGACTTTAATTTC 60345 || |||||||| ||||| | ||| Sbjct 13795 CAGATAATTGTGCAACTTTTAATTC 13819 >seq2337 Length=105674 Score = 84.2 bits (92), Expect = 6e-11 Identities = 67/80 (84%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 410493 GTGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGGGTTCGAGTCCCGTC 410552 ||| |||||||||||||| | |||| |||||| ||| ||||||||||||||||||||| Sbjct 64067 GTGGCGCAATGGATAGCGCATCGGACTCCTAATCCGGAGGTTGCGGGTTCGAGTCCCGTC 64126 Query 410553 GTGGGTAAtttttttAATTT 410572 | || | ||||||| |||| Sbjct 64127 GAGG--ACTTTTTTTTATTT 64144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471751221026240