Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq3020 118 1e-21 >seq3020 Length=37895 Score = 118 bits (130), Expect = 1e-21 Identities = 333/495 (67%), Gaps = 21/495 (4%) Strand=Plus/Plus Query 172457 TGTTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGA 172516 ||||||| ||||| || | ||||| ||| | |||||||| ||| | || || | || Sbjct 24612 TGTTAAAATTTGGGATCAGAATGGGTCTAGAGAATTTTTGGATAATTTAGGATTCAAAGA 24671 Query 172517 AAGAAAAGAAGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCA 172576 |||||| ||||||||||| ||| | ||||||||||||||||| ||| || ||| | Sbjct 24672 TAGAAAAACTGGTGATTTAGGTCCAGTGTATGGATTTCAATGGAGGCATTTCGGTGCTAA 24731 Query 172577 ATATATCGACTGTGATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTAT 172636 ||| | |||||| |||| |||||||||||| ||| | | |||| | | Sbjct 24732 ATACAAAACATGTGATGATAATTATGATAAACAAGGAGTGGATCAACT--GGCAAA-TGT 24788 Query 172637 TAATAC-TTTA---CAAAACAACCCAGAAAGTAGAAGGATGTTAATTGATAGTTGGAATG 172692 | |||| |||| ||||| |||| || || || || || || | | ||||| | Sbjct 24789 T-ATACATTTAATTAAAAACGACCCGGATAGCAGGAGAATTGTATTATCTTCATGGAACG 24847 Query 172693 -TACCTCAACTTG-ATAAAATGGTTCTTCCTCCTTGCCATACTTTAGCACAATTTTATGT 172750 || | | ||| | |||| | || || |||||| | | ||||| ||||| Sbjct 24848 CTA--TGGATTTGCCGGATATGGCGTTACCCCCATGCCATTGTCTCTGTCAATTCTATGT 24905 Query 172751 CAGaaaaaaaTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGG 172810 | || || ||| ||| ||||||||||| ||| |||| || ||| | ||| | || Sbjct 24906 TTGTAATAA--CAA-GTTATCGTGTCAGTTATACCAACGATCTGCAGATATGGGACTTGG 24962 Query 172811 GGTACCTTATAATATTGGATTTTATTCATTTTTAATACTTGTGTTAAGTAAATGGTGC-A 172869 || || | ||||||| ||||| |||||| || || | | || | | | Sbjct 24963 TGTCCCATTCAATATTGCTAGCTATTCTCTTTTAACTTTTATGCT-GGCTCATATTACTA 25021 Query 172870 AT--TTAACTCCAGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAATCA 172927 || | || || || | |||||||| ||| ||||||||| ||| || ||| ||||| Sbjct 25022 ATACTGAA--CCTGGTGAATTTATTCACACTATTGGAGATGCTCATGTTTATGTTAATCA 25079 Query 172928 TGTTGAACCTTTAAA 172942 ||||||||||||||| Sbjct 25080 TGTTGAACCTTTAAA 25094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632461770457600