Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2377 123 2e-23 seq1640 114 1e-20 seq1952 87.8 1e-12 >seq2377 Length=22370 Score = 123 bits (136), Expect = 2e-23 Identities = 170/232 (73%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CG 29617 ||| || ||||| | ||| || ||||| | || |||||||| ||||| |||||||| | Sbjct 337 TCCACCTCTCAATCTCAGTACTAAATGCAAAGTAGATTCTTTCTGAATATTATAATCACT 278 Query 29618 CAA--TGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGG 29675 ||| | ||| | || || | |||||| |||||| | || || | ||| || || || Sbjct 277 CAAACTTCTGCCA---TCTTCCAATTGTTTACCAGCAAAAATTAAACGTTGTTGGTCTGG 221 Query 29676 CGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTT 29734 ||||| || || || ||||| |||||||| ||| ||| |||| | || || | ||| Sbjct 220 AGGAATCCCTTCCTTATCTTG-AATTTTTGCTTTTACATTTTCAATTGTATCGCTAGGTT 162 Query 29735 CTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | |||||||| || || ||||| || || | ||||||||||| || ||||| Sbjct 161 CAACTTCAAGGGTAATGGTTTTTCCGGTAAGTGTTTTAACAAAAATTTGCAT 110 >seq1640 Length=44113 Score = 114 bits (126), Expect = 1e-20 Identities = 108/135 (80%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 29656 ATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGT 29714 || || | ||| ||||| || ||||| |||||||| ||||| |||||| | || ||| | Sbjct 44109 ATTAAACGTTGTTGATCTGGAGGAATTCCCTCTTTATCTTG-AATTTTCGCCTTAACATT 44051 Query 29715 TTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAAC 29774 ||| | ||| ||| | | || ||||||||||| ||||| || |||||||| |||||||| Sbjct 44050 TTCAATAGTATCACTAGGCTCAACTTCAAGAGTAATAGTCTTTCCAGTTAAAGTTTTAAC 43991 Query 29775 AAATATCTGCATTTT 29789 |||||| |||||||| Sbjct 43990 AAATATTTGCATTTT 43976 >seq1952 Length=33364 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| ||||| || |||| ||| ||| ||| |||| | || || || |||| ||| Sbjct 32348 ATACCTTCTTTATCCTGTATTTTCGCTTTAACATTTTCAATGGTATCCGACGGTTCAACT 32407 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT-TTTAAAA 29793 || | ||| |||||||| || ||||||||||||||||| || ||||| |||| || Sbjct 32408 TCCAAAGTAATAGTTTTTCCCGTTAAGGTTTTAACAAAAATTTGCATGTTTATAA 32462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385202674096320