Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq3020 102 1e-16 >seq3020 Length=37895 Score = 102 bits (112), Expect = 1e-16 Identities = 327/498 (66%), Gaps = 27/498 (5%) Strand=Plus/Plus Query 168584 TGTTAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGA 168643 ||||||| ||||| | | ||||| ||| | |||||||| ||| | || || | || Sbjct 24612 TGTTAAAATTTGGGATCAGAATGGGTCTAGAGAATTTTTGGATAATTTAGGATTCAAAGA 24671 Query 168644 AAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCA 168703 |||||| ||||||||||||||| | ||||||||||||||||| ||| || ||| | Sbjct 24672 TAGAAAAACTGGTGATTTAGGTCCAGTGTATGGATTTCAATGGAGGCATTTCGGTGCTAA 24731 Query 168704 ATATATTGACTGTGATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCAAA--CT 168761 ||| | |||||| |||| ||||||||| || ||| | | |||| | Sbjct 24732 ATACAAAACATGTGATGATAATTATGATAAACAAGGAGTGGATCAACT--GGCAAATGTT 24789 Query 168762 ATAAATACTTTACACAACAATCCGGAAAATAGAAGAA---TATTA-ATTAATAG-----T 168812 ||| || | | ||| | ||||| | || |||| ||||| || || | | Sbjct 24790 ATACATTTAATTAAAAACGACCCGGATAGCAGGAGAATTGTATTATCTTCATGGAACGCT 24849 Query 168813 TGGGATGTACCACAACTTGATAAAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATTT 168872 |||| | || ||| |||| | ||||| || || | | ||||| Sbjct 24850 ATGGATTTGCC------GGAT---ATGGCGTTACCCCCATGCCATTGTCTCTGTCAATTC 24900 Query 168873 TATGTAAGGAAAAAATCAATCTTAGATTGTCAGTTGTATCAAAGATCAGCTGATTTAGGA 168932 ||||| | || || ||| ||| |||||||| || ||| |||| || ||| | ||| Sbjct 24901 TATGTTTGTAATAA--CAA-GTTATCGTGTCAGTTATACCAACGATCTGCAGATATGGGA 24957 Query 168933 TTAGGAGTACCTTATAATATTGGATTTTATTCATTTTTAACACTTGTGCTAAGTAAATGG 168992 | || || || | ||||||| ||||| ||||||| || |||| | | Sbjct 24958 CTTGGTGTCCCATTCAATATTGCTAGCTATTCTCTTTTAACTTTTATGCTGGCTCATATT 25017 Query 168993 TGTAAT-TTGACGCCTGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAA 169051 |||| ||| ||||| | |||||||| ||| ||||||||| ||| || ||| || Sbjct 25018 ACTAATACTGA-ACCTGGTGAATTTATTCACACTATTGGAGATGCTCATGTTTATGTTAA 25076 Query 169052 CCATGTTGAACCTTTAAA 169069 ||||||||||||||||| Sbjct 25077 TCATGTTGAACCTTTAAA 25094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635149652185600