Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq3020 114 2e-20 seq1290 82.4 1e-10 >seq3020 Length=37895 Score = 114 bits (126), Expect = 2e-20 Identities = 332/495 (67%), Gaps = 21/495 (4%) Strand=Plus/Plus Query 171669 TGTTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGA 171728 ||||||| ||||| || | ||||| ||| | |||||||| ||| | || || | || Sbjct 24612 TGTTAAAATTTGGGATCAGAATGGGTCTAGAGAATTTTTGGATAATTTAGGATTCAAAGA 24671 Query 171729 AAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCA 171788 |||||| ||||||||||||||| | ||||||||||||||||| ||| || ||| | Sbjct 24672 TAGAAAAACTGGTGATTTAGGTCCAGTGTATGGATTTCAATGGAGGCATTTCGGTGCTAA 24731 Query 171789 ATATATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTAT 171848 ||| | ||| || |||| |||||||||||| ||| | | |||| | | Sbjct 24732 ATACAAAACATGTGATGATAATTATGATAAACAAGGAGTGGATCAACT--GGCAAA-TGT 24788 Query 171849 TAATAC-TTTA---CAAAACAACCCAGAAAGTAGAAGGATGTTAATTGATAGTTGGAATG 171904 | |||| |||| ||||| |||| || || || || || || | | ||||| | Sbjct 24789 T-ATACATTTAATTAAAAACGACCCGGATAGCAGGAGAATTGTATTATCTTCATGGAACG 24847 Query 171905 -TACCTCAACTTG-ATAAAATGGTTCTTCCTCCTTGCCACACTTTAGCACAATTTTATGT 171962 || | | ||| | |||| | || || ||||| | | ||||| ||||| Sbjct 24848 CTA--TGGATTTGCCGGATATGGCGTTACCCCCATGCCATTGTCTCTGTCAATTCTATGT 24905 Query 171963 CAGaaaaaaaTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGG 172022 | || || ||| ||| ||||||||||| ||| |||| || ||| | ||| | || Sbjct 24906 TTGTAATAA--CAA-GTTATCGTGTCAGTTATACCAACGATCTGCAGATATGGGACTTGG 24962 Query 172023 GGTACCTTATAATATTGGATTTTATTCATTTTTAATACTTGTGTTAAGTAAATGGTGC-A 172081 || || | ||||||| ||||| |||||| || || | | || | | | Sbjct 24963 TGTCCCATTCAATATTGCTAGCTATTCTCTTTTAACTTTTATGCT-GGCTCATATTACTA 25021 Query 172082 AT--TTAACTCCAGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAATCA 172139 || | || || || | |||||||| ||| ||||||||| ||| || ||| ||||| Sbjct 25022 ATACTGAA--CCTGGTGAATTTATTCACACTATTGGAGATGCTCATGTTTATGTTAATCA 25079 Query 172140 TGTTGAACCTTTAAA 172154 ||||||||||||||| Sbjct 25080 TGTTGAACCTTTAAA 25094 >seq1290 Length=30651 Score = 82.4 bits (90), Expect = 1e-10 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 192572 TGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGCTATAACCAAGAAGACAGTAT 192631 |||||| || |||||||| ||||| |||| ||||||||||||||||| |||||| ||| Sbjct 14314 TGGTATAAACGCTATTGTGGCTATTGCTTCATATACTGGCTATAACCAGGAAGACTCTAT 14373 Query 192632 TATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTTGGCACTATAACTTATAATACATA 192691 ||| | || || || | ||||| | || || ||| | ||||| |||| | || Sbjct 14374 TATCATGAACGAATCTGCAATTGATCGTGGTTTTTTTAGGTCTATATTCTATAGGTCTTA 14433 Query 192692 TACAGTTGAAGAAACAAAAA 192711 | | | || ||||| || || Sbjct 14434 TTCTGATGCAGAAAAAAGAA 14453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628503544627200