Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1444 315 5e-80 seq1980 246 2e-59 seq1290 158 9e-33 seq1811 118 8e-21 seq780 118 8e-21 seq2489 89.7 4e-12 >seq1444 Length=49888 Score = 315 bits (348), Expect = 5e-80 Identities = 816/1222 (67%), Gaps = 35/1222 (3%) Strand=Plus/Plus Query 281257 AGTATAATTTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTTCTTGTTATCTGCTTC 281316 || ||| || || | ||||||||||| || | | |||||||| | ||||| ||| Sbjct 45274 AGCATAGTTCTCCAGTTCATTTTTAGCGTCGATTGAGGCTTTTTTAATATTATCCTCTTT 45333 Query 281317 TTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCG 281376 |||||||| |||||| || ||| |||||| ||||||| || ||||| ||| Sbjct 45334 TTCAAATTTTTTAGCCTCATTAACCATTCTGTCAATTTCTGATT--GAGAA-CTTTTTTT 45390 Query 281377 ATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATT 281436 | || |||||| | | || || || ||| | | |||| | || || || || Sbjct 45391 TTCGTTGGTAATAATTAAATCTTTTTTTTGGTTGGCTTCTTTACACTCTGCCGTAACCTT 45450 Query 281437 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 281496 | ||||||||| || |||| ||||||||||||||| | || || | ||||| || | Sbjct 45451 CAAAATACCATTAGCGTCCATATCAAATGTGACTTCTACTTTGGGTCCGCCTCTTGGACC 45510 Query 281497 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 281556 || ||||| || |||| |||| |||| | || ||| ||||| | || | Sbjct 45511 CGGAGGGATACCAGTTAAATCAAATTTTCCTAATAAATGATTGTCTTTTGACAACGGCCT 45570 Query 281557 TTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATAC 281616 ||| || || |||||| || | |||| ||| ||| ||||| | || || ||||| Sbjct 45571 TTCTCCTTCATAAATTTCAATTGAAACTGCAGGTTGGTTATCGGCGTACGTCGTAAACGA 45630 Query 281617 TCTGGAT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCAC 281675 ||| || ||||| ||||| || || || | |||||||| || ||||| | | | Sbjct 45631 -CTGCATCTTTTTGGTGGGAATAGTGGTATTACGTTCAATAATTTTAGTCATTACAGAGC 45689 Query 281676 CAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA--TTTTGAAG 281733 | | ||| | || | || | ||||| || |||| || |||||| | ||||| Sbjct 45690 CTGAAGTTGTAATGCCCATCGATAAAGGAGCTACGTCAAGTA--ACAATAAATCTTGAAC 45747 Query 281734 TTTTTCATCAGTTTGA---CCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAAC 281790 ||||||| ||||| ||| | | ||| || ||||||| || |||||||| || || Sbjct 45748 TTTTTCAC---TTTGATCGCCAGCCATAATCGCAGCTTGAACTGCCGCACCATACGCGAC 45804 Query 281791 AGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAG 281850 ||||| || ||||||| | | ||||| |||||||||||| || || || ||||| | Sbjct 45805 GGCTTCGTCTGGATTAATGCTATGATTTAATTTTTTACCATTAAAGAATTTAGAAAGCAA 45864 Query 281851 ---TTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTG 281907 ||| || || ||||| |||| || || ||||| | ||||| || || | || Sbjct 45865 ACTTTGAATT---TTTGGAATTCGAGTAGAACCACCAACAAGAACAATATCGTGTATTTG 45921 Query 281908 TGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTC-TAA 281966 |||||| | | |||||| || |||| || || || || || ||| | | Sbjct 45922 ACTTTTATCAAATCCTGAATCACGCAATGCTTTGTCGACCGGGTCGAGTGT-GCTGGTGA 45980 Query 281967 ACAAGTC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAAT 282024 | | || || | ||| ||||| ||| ||||| ||| | || | ||| || || Sbjct 45981 ATATATCATTGCATAAA--TCTTCCAATCTAGCTTGAGTCATGGTAGTCTGATAGTCGAT 46038 Query 282025 TCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTT 282084 || || |||| || || | | || ||||||| | ||| |||| ||||| Sbjct 46039 ACCATCAAACACTGAGTCTATGTTGATTATAGTTTGCGATTCAGAGGATAAATTTCGTTT 46098 Query 282085 AGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG-ATTCAAATCTG 282143 |||||||| ||| | || | | | || | ||| || || || | | | |||| Sbjct 46099 GGCACGTTCGCATTCAGTTTTCAAACGACGCATAGCTCTT-CTATTTCCAGTAATATCTT 46157 Query 282144 TTTTATATTTTCTCTTGAAA-TCTTCAACACACCATGTTACAAGA--CGATTATCAAAAT 282200 | || | ||| || |||||| |||| || || || | || | | | |||| | Sbjct 46158 TCTTGTGTTT-CTTTTGAAAATCTTGGACGCAG--TGCTGCACTAATCTCTCGTCAATGT 46214 Query 282201 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 282260 ||||||||||||| | ||| | ||| | ||| | | |||||| | | || | ||| Sbjct 46215 CTTCACCTCCCAAATGAGTGTCTCCAGCCGTTGATTTTACTTCATATACACCTCCGACAA 46274 Query 282261 GAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 282320 || ||||| || ||||||| || ||||| ||||| |||||||| | || | | | Sbjct 46275 TAGTCAAAATAGAAACATCAAATGTGCCACCTCCCATGTCAAAAATTAAAACGTGTCTAT 46334 Query 282321 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 282380 ||| ||| |||| || | |||||||| | ||||||||| |||||||| || | || Sbjct 46335 CTTCGTCGCCAATTTTGTCCAACCCATACGCTAGAGCAGCAGCCGTTGGTTCGTTCAAAA 46394 Query 282381 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 282440 | ||||||||||||| ||||||||| | ||||||||| || ||||||||||| || Sbjct 46395 TCCTCAAAACATTAATACCAGCAATAGCACATGCATCTTTTGTAGCTTGTCTTTGACCAT 46454 Query 282441 CGTTAAAATATGCAGGAACAGT 282462 | || ||||| || ||||| || Sbjct 46455 CATTGAAATAGGCTGGAACTGT 46476 >seq1980 Length=651 Score = 246 bits (272), Expect = 2e-59 Identities = 418/602 (69%), Gaps = 19/602 (3%) Strand=Plus/Plus Query 281308 ATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAA 281367 |||| ||| |||||| | ||||||||| ||| |||||| ||||||| | || || | Sbjct 12 ATCTTCTTTTTCAAACTTTTTAGCTTCATTAACCATTCTTTCAATTTCAGATTGGGAAAC 71 Query 281368 TCTTCCGCGATTATTAGTAATAGTAATAT---TCTTGGATTTGTTTG--TTGATTTATCA 281422 | || || | | |||||||||| || |||| |||||| ||| || Sbjct 72 TTTTTT---ATCACTTGTAATAGTAACATCAGTCTTAACGTTGTTTTCTTTGCATT---- 124 Query 281423 GCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGG 281482 | ||||| | || | |||||| || ||||| | |||||| || |||||||||||||| Sbjct 125 -CAGCAGTAATTTTCATAATACCGTTAGCATCAATATCAAAGGTAACTTCAATTTGAGGA 183 Query 281483 ACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCT 281542 || |||| | |||||||| || || || | ||| |||| | ||| ||| Sbjct 184 ACACCTCGTGGTGCAGGTGGTATTCCGGTTAAGTCAAAACGACCCAACAAGTGATTGTCT 243 Query 281543 TTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAA 281602 ||||| | | |||||| || ||| ||||||| ||||||||| ||||||||||||||| | Sbjct 244 TTAGTCATTGGTCGTTCTCCTTCGTAAATTTGAATAGTAACTGCAGTTTGATTATCTGCA 303 Query 281603 TAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662 || |||| |||| | |||||| ||||||||| ||||| || | ||| || Sbjct 304 TACGTTGAGAATATTTGTTGTTTTTTTGTAGGAATTGTACAATTTCTTTCTACAATTTTA 363 Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 | ||| | | |||||||||| | || | ||| ||||| || ||||| | | | Sbjct 364 GACATGACATCACCAGCTGTGCAGATTCCCAAAGATAGAGGTGTAACATCCAACAATAAT 423 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTG---ACCAACAAGAATAGCTGCTTGAATAGCAGCA 281779 | || ||||| ||| ||| |||| |||| | ||| || ||||||| ||| ||| Sbjct 424 AGATCTTGAACCTTT---TCACTTTGGTCACCACTCATAATTGCGGCTTGAACAGCGGCA 480 Query 281780 CCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAA 281839 ||||| || ||||||||||||||||| | | | ||| | |||||||||||| || ||| Sbjct 481 CCATAAGCTACAGCTTCATCAGGATTGATGCTGTGATTCAATTTTTTACCATTAAAGAAA 540 Query 281840 TTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899 | ||| | | || | | ||||| || | || ||||| ||||| || |||| ||| Sbjct 541 TCTGACAACAATTTTTGAATTTTAGGGATTCTAGTAGATCCACCAACCAAAACAACATCA 600 Query 281900 TG 281901 || Sbjct 601 TG 602 >seq1290 Length=30651 Score = 158 bits (174), Expect = 9e-33 Identities = 140/175 (80%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 282322 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 |||||||| | ||||| | ||||| || | ||| ||||||||||| ||||| || | Sbjct 18190 TTTGTCTTCGGCCTTATCTAACCCATAAGCGAGAGCGGCAGCAGTTGGCTCATTTATTAC 18249 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 |||||||||||| | |||||||||| |||| |||||||| || ||||| ||||| ||||| Sbjct 18250 TCTCAAAACATTCAAACCAGCAATTTTTCCAGCATCTTTTGTAGCTTGCCTTTGAGAATC 18309 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAA 282496 ||||||||| || || ||||||||||| |||| ||||| | ||||| |||| Sbjct 18310 GTTAAAATAAGCGGGTACAGTAATAACTGCATTATTTACTGGTGATCCAACATAA 18364 Score = 107 bits (118), Expect = 1e-17 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 86114 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 86173 |||| || || || ||||| || |||||||| ||||| |||| | | | ||||| |||| Sbjct 18207 CTAACCCATAAGCGAGAGCGGCAGCAGTTGGCTCATTTATTACTCTCAAAACATTCAAAC 18266 Query 86174 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 86233 | |||||||| ||| ||| || ||||| || || | || |||||||| || |||| Sbjct 18267 CAGCAATTTTTCCAGCATCTTTTGTAGCTTGCCTTTGAGAATCGTTAAAATAAGCGGGTA 18326 Query 86234 CAGTAATAACTGCTTTATT 86252 ||||||||||||| ||||| Sbjct 18327 CAGTAATAACTGCATTATT 18345 Score = 89.7 bits (98), Expect = 4e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 69841 ACGAGGAGATTGATTATGATCTGGGAAAGGAATATTAGATGAAATTAGTCCGAGAATCAT 69900 ||| ||||||||||| |||||||||||||||||| |||| | | || ||| | ||||| Sbjct 14155 ACGTGGAGATTGATTGTGATCTGGGAAAGGAATAATAGAAGCACATACTCCCAATATCAT 14096 Query 69901 ACACGGATGAATTTCACAATGAGTGTA 69927 |||| ||||||||||||||||| || Sbjct 14095 TGACGGGTGAATTTCACAATGAGTATA 14069 >seq1811 Length=36824 Score = 118 bits (130), Expect = 8e-21 Identities = 322/490 (66%), Gaps = 16/490 (3%) Strand=Plus/Plus Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 |||||| ||||| || || | ||||||| || || |||| |||||||| || ||||| Sbjct 8073 TTTATCGGCGGCGGTAACGTGAAGAATAGAGTTAGCGTCCATTTCAAATGTAACCTCAAT 8132 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535 ||| || || |||||| | || ||| |||| ||||| ||| | |||| || Sbjct 8133 TTGTGGAACACCTCTCGGTGCCTTCTTGATACCTTTCAAATCGAATTTGCCCAATAGATG 8192 Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTC--GAAAATTTGGATAGTAACTACAGTTTGA 281593 || ||||| | | || |||||| || | | | | ||||||||| | ||| Sbjct 8193 GTTGTCTTTGACCATTGATCTTTCACCTTCATGGACACT--GATAGTAACAGTATCTTGG 8250 Query 281594 TTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCA 281653 ||||| | | || | ||||| | | |||||| || || ||||||| | Sbjct 8251 TTATCAGCAGCGGTAGAAAATATTTGAGTTTTTTTGGTTGGTATAACACTGTTTCTGGGA 8310 Query 281654 ATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCA 281713 |||| || ||||| | || ||| | ||||| | ||| | || | || |||| ||| Sbjct 8311 ATAACTTTTGTCATCACCCCTCCAACAGTTTCGATACCCAAAGTCAATGGGTTGACGTCA 8370 Query 281714 ACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATA 281773 | || |||||| | | | || || | |||| | || | | ||||||| Sbjct 8371 ATTAAAACAATACTGTCAC------CACCATCTGCACCACTCAAAACACCAGCTTGAACT 8424 Query 281774 GCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATT---TAGTTTTTTACCA 281830 ||||| |||||||||| |||||||| || || | || || | | ||| || ||| Sbjct 8425 GCAGCTCCATATGCAATGGCTTCATCGGGGTTGA---TTCCACTGGCTGGTTCCTTTCCA 8481 Query 281831 TTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAAT 281890 || ||||| | | || ||||| || || ||||||||||||| || ||||| || || Sbjct 8482 TTCAAAAATTGTTGAACAAGTTTTCGGACTTTAGGAATACGAGTAGAACCTCCTACCAAA 8541 Query 281891 ACAATTTCAT 281900 || | ||||| Sbjct 8542 ACGACTTCAT 8551 >seq780 Length=27146 Score = 118 bits (130), Expect = 8e-21 Identities = 256/374 (68%), Gaps = 17/374 (5%) Strand=Plus/Minus Query 400251 AAAATTATATAATGCTCACAAAGCAGGAACCAAAGAAGGATATAAAT-GTACCCTAATTT 400309 ||||||| | ||||| | || || ||||| ||| || ||| ||| |||| ||||||| Sbjct 14723 AAAATTAGAAGATGCTAATAATGCTGGAACAAAA-AATTCTATTAATTGTACTCTAATTT 14665 Query 400310 TGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAATGTTATTGGAAGAG 400369 | ||||| || ||||| || ||||| | ||| | ||| | |||| | || | Sbjct 14664 TAACAGAAGGGGATTCGGCGAAAACGCTTGCTGTAAGTGGATTATCTGTTGTCGGGCGTA 14605 Query 400370 ATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTAGTCCTa 400429 || |||||| ||||| || | |||| ||| |||||||||| || || ||| || | Sbjct 14604 ATCTTTATGGTGTTTTTCCGTTACGAGGTAAAGTTTTGAATGTAAGAGAAGCTTCTCACA 14545 Query 400430 aaaaaaTTGCCGATAATGAGGAAATTACAGCAATC--aaaaaaaTTGTTGGACTTGAA-- 400485 || | || || |||| ||||| || |||| | |||||| | ||| ||||| Sbjct 14544 AACAGATCATGGAAAATGCTGAAAT--CAACAATATTATAAAAATCATGGGA-TTGAAAT 14488 Query 400486 -CAAGGAAAAGTTTAT-GAT---GAT---CTCAAAGGTTTACGATATGGTAGTATTATGA 400537 ||| || || | | ||| ||| || ||| |||| ||||||||| || ||| Sbjct 14487 ACAAAGATAAATACGTAGATAGAGATTCACTAAAAAGTTTGAGATATGGTAAAATATTGA 14428 Query 400538 TTCTTGCTGATCAAGATGTTGATGGGTACCATATCAAAGGATTAATCATGAATTTTATCC 400597 | | | ||||||||| ||||| | |||||| ||||| ||| | || |||||||||| Sbjct 14427 TAATGACAGATCAAGATCAAGATGGATCCCATATTAAAGGTTTATTGATTAATTTTATCC 14368 Query 400598 ATTGTTTTTGGCCA 400611 ||| | |||||| Sbjct 14367 ATTATAACTGGCCA 14354 >seq2489 Length=37580 Score = 89.7 bits (98), Expect = 4e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 164595 TACAGGACTGTTTGGGAAATTCCTCAAAAATCCATCATTGAAATGGCAGCTGATAGAGCA 164654 |||| ||||| |||||||| || || |||| || || || ||||||||||||||||| Sbjct 25625 TACAAAACTGTATGGGAAATACCACAGAAATTAATTATAGATATGGCAGCTGATAGAGCT 25684 Query 164655 CCTTTTGTTGATCAAACACAGAGTATGAATTTGTACATTGATAAACCTAGTTTTGCAAGA 164714 || | | ||||||| || ||||||| | | ||| | | || | || ||| | | Sbjct 25685 ATTTATATAGATCAAAGTCAATCTATGAATATTCATATTCAAAGTCCAAATTATGCTAAA 25744 Query 164715 TTAAATTCTTGTCTATTTTATGCATGGAGGAAAGGTCTCAAAACCGGTATGTATTATTTG 164774 || | || | ||||| | |||| || ||| | || || || ||||||||||| Sbjct 25745 TTGACAAGTTTACATTTTTACACTTGGAAAAAGGGTTTGAAGACTGGCATGTATTATTTA 25804 Query 164775 AGATCTAAACCAGC 164788 ||| ||||||| || Sbjct 25805 AGAACTAAACCTGC 25818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740457582875520