Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2377 212 1e-49 seq1640 129 1e-24 seq1952 113 9e-20 >seq2377 Length=22370 Score = 212 bits (234), Expect = 1e-49 Identities = 183/227 (81%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||||||| | ||| ||||| |||| ||||||||||||||| |||||||||||| Sbjct 336 CCACCTCTCAATCTCAGTACTAAATGCAAAGTAGATTCTTTCTGAATATTATAATCACTC 277 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | |||| || ||||| | |||||| |||||||| |||| | |||||| |||||||| Sbjct 276 AAACTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATTAAACGTTGTTGGTCTGGAGGA 217 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||| Sbjct 216 ATCCCTTCCTTATCTTGAATTTTTGCTTTTACATTTTCAATTGTATCGCTAGGTTCAACT 157 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || || || || | || || ||||| || ||||| Sbjct 156 TCAAGGGTAATGGTTTTTCCGGTAAGTGTTTTAACAAAAATTTGCAT 110 >seq1640 Length=44113 Score = 129 bits (142), Expect = 1e-24 Identities = 123/156 (79%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 82676 AAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTAC 82735 ||| |||| | ||||||||||||||| ||||| || ||||||||||| || || || || Sbjct 44113 AAAAATTAAACGTTGTTGATCTGGAGGAATTCCCTCTTTATCTTGAATTTTCGCCTTAAC 44054 Query 82736 ATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTT 82795 ||||||||| |||||| |||| || ||||| | ||| || ||||| || || || || || Sbjct 44053 ATTTTCAATAGTATCACTAGGCTCAACTTCAAGAGTAATAGTCTTTCCAGTTAAAGTTTT 43994 Query 82796 TACAAATATCTGCATTAT-TATATTTTTCTACTAAA 82830 |||||||| |||||| | || | ||| | | |||| Sbjct 43993 AACAAATATTTGCATTTTCTAAAATTTACAATTAAA 43958 >seq1952 Length=33364 Score = 113 bits (124), Expect = 9e-20 Identities = 158/232 (68%), Gaps = 35/232 (15%) Strand=Plus/Plus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 ||||||||||||| |||||| |||| ||||||| ||||| | |||||| |||||||| | Sbjct 32230 CTTTCTGTATATTGTAATCACTTAGACTTCTACCATCTTCCAATTGTTTACCAGCAAAAA 32289 Query 82681 TTAGTCTTTGTTGATCTGGAGGT-----------------------------------AT 82705 | | ||| |||||||| |||||| || Sbjct 32290 TCAATCTCTGTTGATCCGGAGGTATACCTATATAACATTAATCAGGATAATATTATACAT 32349 Query 82706 TCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTC 82765 ||||| ||||| || || || ||||| ||||||||||| ||||| ||||| ||||| Sbjct 32350 ACCTTCTTTATCCTGTATTTTCGCTTTAACATTTTCAATGGTATCCGACGGTTCAACTTC 32409 Query 82766 CAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATA 82817 |||||| || || || || || || || || ||||| || ||||| ||||| Sbjct 32410 CAAAGTAATAGTTTTTCCCGTTAAGGTTTTAACAAAAATTTGCATGTTTATA 32461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981782919593280