Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2489 138 3e-27 seq445 118 3e-21 >seq2489 Length=37580 Score = 138 bits (152), Expect = 3e-27 Identities = 278/409 (68%), Gaps = 5/409 (1%) Strand=Plus/Plus Query 110522 TTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGA 110581 |||||||||||| || || ||||| |||||||| ||||| ||| | | | | | Sbjct 22929 TTGCTTTCTTCTTACTATGAAGGATGACAGCATTGAAGGAATTTACGATACATTAAGACA 22988 Query 110582 AACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTC 110641 | ||||| ||||| || | |||| ||||| || || | | ||| |||||| || Sbjct 22989 ATGCGCTCTAATTTCCAAGAGTGCTGGTGGAATCGGAGTTAATATACATTGTATTCGATC 23048 Query 110642 AAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAG 110701 || || |||| | | |||| || | |||| |||| ||||||| |||||| | Sbjct 23049 CAAGGGTAGTTATATAAAAGGAACGAATGGAACATCAAATGGAATTGTTCCTATGTTACG 23108 Query 110702 AGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATT 110758 ||| || ||| ||| || |||||| | ||||||||| || ||| || || | Sbjct 23109 AGTTTTTGACGCCACAGCTCGATATGTAGACCAAGGTGGTAACAAAAGACCCGGAGCAAT 23168 Query 110759 TGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGA-ATTCTTAGAACTTCGTAAAA 110817 || || ||| | |||||||||||| | ||||| ||||| |||||| | | || | | Sbjct 23169 CGCCATTTATTTAGAACCTTGGCATGCTGATATTTTTGATTTTCTTA-CATTGCGCACTA 23227 Query 110818 ATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATT 110877 || || | | | ||| | | | | |||||||| |||||| ||||||| | |||| Sbjct 23228 ATATTGGTTCTAATGAAACCAAAACGAGAGATTTATTCTATGCATTGTGGATACCTGATT 23287 Query 110878 TATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCC 110926 | || |||| |||||| || || ||| | ||| | ||||| ||||| Sbjct 23288 TGTTTATGAGACGTGTAGAAAAAGATGAAAATTGGACACTTATTTGTCC 23336 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 112979 TGTTATGAAACATGGAACTACAAACTCTCTACTGTTGGCACCAATGCCTACAGCTTCGAC 113038 |||||||||| |||| || ||| ||| | ||||| |||| ||||||||||| || || Sbjct 25348 TGTTATGAAATATGGTGTTAGAAATTCTTTGCTGTTATCACCTATGCCTACAGCGTCAAC 25407 Query 113039 TGCACAGATTCTCGGTAATAATGAATGTTTCGAGCCAATTACAAGTAATATTTATGTCCG 113098 || || ||| | || ||||| |||| | || || |||||||||| |||| || || Sbjct 25408 GGCTCAAATTTTAGGAAATAACGAATCAATTGAAGCATTTACAAGTAACCTTTACGTTCG 25467 Query 113099 ACGTGTTCTAGCAGGTGAGTTT 113120 || ||| || | ||||| ||| Sbjct 25468 TCGGGTTTTATCTGGTGAATTT 25489 >seq445 Length=13936 Score = 118 bits (130), Expect = 3e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 305295 ATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCAC 305354 |||||||| || || || | || | |||| || | |||||||| || || ||| Sbjct 5287 ATATTGTTGAGAGGCACATGCAGGATGACGATTATATTGTTTTCAATAGACAGCCTACAC 5346 Query 305355 TGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGAT 305414 | ||||||||| ||||||| || | ||| ||||||||| | | | || ||||| | Sbjct 5347 TTCATAAAATGAGTATGATGTGCCACAGAGTAAAAGTATTACCGTGGTCTACTTTTCGTT 5406 Query 305415 TAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGC 305474 ||||| |||||| || || |||||||| ||||||||||| || ||||||||| | | Sbjct 5407 TAAATTTAAGTGTAACAACACCATATAATGCTGATTTTGATGGTGACGAAATGAATCTTC 5466 Query 305475 ATGTACCTCAATC 305487 || |||||||||| Sbjct 5467 ATTTACCTCAATC 5479 Score = 107 bits (118), Expect = 5e-18 Identities = 142/191 (74%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 304882 CAATT--TACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAG 304939 ||||| ||||||| ||| | || || |||||||||||||||||| |||||| || || Sbjct 4878 CAATTGCTACAATACCATGTGGCTACGTTAATGGATAATGAAATTCCTGGAA-TACCTAG 4936 Query 304940 -GCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAA-GGTAAAG 304997 || | |||| |||||| | |||||||| || | ||| | |||||| || |||| Sbjct 4937 AGCTGCACAAAAATCTGGACGTCCTTTAAAATCAATAAAACAAAG-ATTAAAGGGCAAAG 4995 Query 304998 AGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAA 305057 | ||| | |||||||| || | ||||| ||| | ||||||||| || |||| ||| | Sbjct 4996 AAGGTAGAATTCGAGGAAACTTGATGGGTAAAAGGGTTGATTTTTCGGCGAGAACTGTGA 5055 Query 305058 TCACACCTGAT 305068 | ||||| ||| Sbjct 5056 TTACACCAGAT 5066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186759274742720