Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2377 87.8 4e-12 >seq2377 Length=22370 Score = 87.8 bits (96), Expect = 4e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || |||||||| || || | ||||| ||| | || ||| | ||| Sbjct 125 AAAACACTTACCGGAAAAACCATTACCCTTGAAGTTGAACCTAGCGATACAATTGAAAAT 184 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| |||||| |||||||| || ||||| ||| || ||| ||| | | || || Sbjct 185 GTAAAAGCAAAA-ATTCAAGATAAGGAAGGGATTCCTCCAGACCAACAACGTTTAATTTT 243 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || ||||||||||| || | |||| ||||| || | |||||||| || Sbjct 244 TGCTGGTAAACAATTGGAAGATGGCAGAAGTTTGAGTGATTATAATATTCAGAAAGAATC 303 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 |||| | || | || ||||| Sbjct 304 TACTTTGCATTTAGTACTGAGA 325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181767499881920